Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003820.1 Hibiscus syriacus cultivar Beakdansim tig00008194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59168

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3640--3685
20
2.3
20
88
0
65
28
32
19
19
1.96
3704--3863
65
2.5
66
83
9
188
31
23
17
28
1.97
10579--10657
23
3.5
22
79
8
88
27
26
20
25
1.99
13300--13506
64
3.2
63
80
14
208
29
24
18
27
1.98
25003--25107
31
3.4
31
90
6
160
24
7
9
58
1.56
27434--27462
14
2.1
14
100
0
58
6
0
20
72
1.07
29188--29227
19
2.1
19
95
0
71
45
5
12
37
1.64
29193--29240
19
2.5
19
86
0
60
50
4
12
33
1.59
31545--31589
23
2.0
23
86
4
65
60
6
15
17
1.56
32721--32777
15
3.7
15
77
9
69
22
35
26
15
1.94
32725--32787
32
2.0
32
93
0
108
25
34
22
17
1.95
32721--32789
15
4.3
16
75
10
52
23
33
26
17
1.96
33102--33165
32
2.0
32
87
0
92
50
1
1
46
1.20
34954--35013
18
3.6
17
70
21
56
38
0
8
53
1.31
34948--35011
31
2.1
31
93
0
110
42
0
7
50
1.31
39769--39814
20
2.2
20
88
11
67
23
23
10
41
1.86
40541--40598
18
3.0
18
76
14
53
27
32
18
20
1.97
40560--40642
22
3.8
22
93
3
132
34
32
14
18
1.91
41137--41294
63
2.5
64
82
7
171
23
18
22
35
1.96
46053--46106
27
2.0
27
82
7
65
55
3
1
38
1.28
49604--49696
39
2.4
39
100
0
186
29
10
16
44
1.81
49849--49987
36
3.9
36
76
10
124
42
6
0
50
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49922--49983
21
2.9
22
85
4
83
46
3
0
50
1.17
49893--49961
6
12.2
6
75
17
58
42
2
0
55
1.15
50457--50481
2
12.5
2
100
0
50
48
0
0
52
1.00
50737--50770
3
11.0
3
87
6
50
35
0
0
64
0.94
51375--51409
2
17.5
2
100
0
70
51
0
0
48
1.00
52245--52287
22
2.0
22
90
4
70
39
9
30
20
1.84
52398--52429
14
2.2
15
94
5
57
46
28
3
21
1.66
53101--53277
96
1.9
94
82
7
223
25
21
14
38
1.91
53476--53579
36
2.9
36
75
9
90
29
18
12
39
1.87
53729--53825
28
3.4
28
84
12
117
25
16
13
44
1.84
53850--54180
134
2.5
129
81
5
351
25
31
18
25
1.97
54375--54411
3
12.7
3
94
5
67
32
0
0
67
0.91
55825--55929
30
3.5
29
75
12
79
20
13
11
55
1.68
55883--55965
30
2.8
29
79
13
89
15
14
12
57
1.65
56029--56072
19
2.3
19
84
7
54
27
4
13
54
1.58
57461--57586
60
2.1
60
82
8
150
38
13
12
35
1.83
58138--58272
43
3.2
43
87
6
195
34
34
16
14
1.88

Tables:   1

The End!