genome.fa.s3821.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003821.1 Hibiscus syriacus cultivar Beakdansim tig00008195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64185

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12971--13028	19	3.1	18	90	9	89	27	31	0	41	1.56
13279--13328	16	2.8	19	76	17	70	52	30	0	18	1.46
15258--15335	23	3.4	23	81	10	81	23	20	33	23	1.97
15281--15335	23	2.4	22	88	8	83	23	18	34	23	1.96
19079--19117	20	1.9	21	89	5	62	30	7	5	56	1.49
21100--21141	21	2.0	21	95	0	75	11	23	40	23	1.88
22588--22662	35	2.1	35	87	4	107	45	24	0	30	1.53
22588--22680	35	2.6	36	83	3	91	43	26	1	29	1.62
23307--23440	29	4.6	29	82	1	133	48	10	1	39	1.47
23304--23440	59	2.3	58	81	1	157	48	10	1	38	1.47
26368--26420	18	3.0	17	86	8	70	28	24	7	39	1.82
30208--30258	26	2.0	26	88	0	75	17	23	35	23	1.95
31497--31531	3	11.7	3	100	0	70	34	0	0	65	0.93
31582--31629	19	2.5	20	78	18	57	58	0	0	41	0.98
31573--31628	9	6.0	9	78	17	53	55	0	1	42	1.10
31582--31642	19	3.2	18	75	15	52	60	0	1	37	1.07
31886--31920	16	2.1	17	89	5	54	31	0	0	68	0.90
32092--32146	21	2.8	21	83	10	71	41	0	3	54	1.18
35371--35396	11	2.4	11	100	0	52	23	7	19	50	1.73
43067--43122	24	2.3	24	100	0	112	37	16	17	28	1.91
43372--43499	63	2.0	63	100	0	256	31	3	4	60	1.32
43678--43718	21	2.0	20	85	4	55	21	31	26	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43678--43718	10	4.0	10	87	6	55	21	31	26	19	1.97
44298--44345	18	2.5	20	90	10	73	31	2	0	66	1.03
45477--45504	2	14.0	2	100	0	56	50	0	0	50	1.00
46569--46659	13	7.0	13	72	18	73	20	4	8	65	1.37
46598--46671	13	5.3	14	75	18	57	21	2	8	67	1.29
46804--46840	2	18.5	2	100	0	74	48	0	0	51	1.00
49524--49572	18	2.7	18	96	0	89	26	34	24	14	1.94
52879--52940	18	3.5	18	88	4	99	30	35	17	16	1.92

Tables:   1

The End!