genome.fa.s3825.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003825.1 Hibiscus syriacus cultivar Beakdansim tig00008201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105745

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101--303	81	2.5	81	84	10	265	27	15	22	34	1.94
457--623	65	2.7	60	79	8	199	26	13	21	38	1.91
591--983	121	3.3	120	87	3	549	25	14	24	35	1.94
889--979	34	2.8	31	76	16	96	26	9	25	38	1.87
924--988	34	1.9	34	84	6	87	29	10	21	38	1.87
1395--1469	32	2.4	31	80	8	80	34	25	14	25	1.94
2534--2577	13	3.6	12	85	11	54	0	20	6	72	1.07
6329--6536	103	2.0	103	100	0	416	35	14	9	40	1.79
11133--11247	15	8.1	15	67	18	57	51	5	1	41	1.34
11132--11262	42	3.1	42	98	0	253	50	6	2	41	1.40
11307--11369	35	1.9	31	84	12	81	47	11	0	41	1.39
15914--15958	23	2.0	22	83	16	56	62	4	0	33	1.15
16730--16853	63	2.0	63	88	1	187	44	4	8	41	1.57
18355--18396	21	2.0	21	85	0	57	50	0	0	50	1.00
19382--19416	18	1.9	19	88	11	56	45	2	11	40	1.55
19476--19514	13	2.9	14	84	7	53	61	15	5	17	1.51
19925--19964	21	1.9	21	89	0	62	37	15	2	45	1.59
20445--20514	27	2.6	27	93	0	122	44	2	15	37	1.62
21704--21772	29	2.4	29	95	0	129	20	28	24	26	1.99
26276--26661	183	2.1	184	90	4	613	43	2	7	46	1.47
31587--31634	22	2.2	22	92	0	78	45	18	16	18	1.85
31597--31659	32	2.0	32	87	0	90	41	17	20	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31694--31733	20	2.0	21	95	5	73	27	32	15	25	1.95
32162--32216	21	2.5	21	94	5	92	43	14	5	36	1.69
32598--32641	23	1.9	23	90	0	70	27	25	29	18	1.98
36087--36756	111	6.0	111	92	1	1049	30	17	22	30	1.96
36087--36756	220	3.0	221	92	1	1056	30	17	22	30	1.96
36087--36756	331	2.0	332	91	2	1076	30	17	22	30	1.96
37924--37999	23	3.3	23	74	20	68	9	18	0	72	1.10
37963--37998	12	2.7	14	83	16	58	13	19	0	66	1.24
56128--56192	23	2.8	23	92	0	112	27	27	26	18	1.98
57075--57176	51	2.0	51	100	0	204	37	25	3	33	1.74
68887--68946	18	3.5	18	82	13	81	31	38	3	26	1.73
68887--68945	3	19.7	3	82	0	73	32	38	1	27	1.67
70502--70593	2	46.5	2	97	2	177	51	0	0	48	1.00
80090--80148	2	29.5	2	100	0	118	49	0	0	50	1.00
81216--81251	19	1.9	19	88	5	56	72	2	11	13	1.23
81435--81476	20	2.1	20	86	8	59	69	2	4	23	1.20
81532--81577	15	3.1	15	82	11	51	73	4	0	21	1.00
81492--81569	12	6.6	11	69	15	50	70	1	5	23	1.14
81493--81577	30	2.9	29	73	15	75	69	2	4	23	1.19
83510--83682	65	2.8	63	86	6	228	26	15	20	36	1.93
84435--84481	13	3.5	13	77	16	51	0	21	2	76	0.89
95191--95222	14	2.3	14	94	0	55	84	0	3	12	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96029--96060	14	2.1	16	88	11	50	25	6	31	37	1.81
96434--96482	20	2.5	20	100	0	98	24	20	12	42	1.86
96495--96651	21	7.5	21	82	11	189	21	19	19	40	1.92
97337--97580	21	11.2	21	69	14	111	31	20	21	26	1.98
97338--97441	42	2.5	42	90	0	163	34	20	20	25	1.96
97506--97580	21	3.6	21	90	0	114	28	26	21	24	1.99
98089--98140	21	2.5	21	93	0	86	28	13	28	28	1.94
98129--98318	20	9.3	20	80	7	188	14	22	23	40	1.90
98317--98363	6	8.3	6	97	2	73	0	17	53	29	1.44
98436--98491	21	2.9	19	76	7	60	35	21	17	25	1.95
98483--98637	20	7.6	20	72	4	139	37	23	21	17	1.94
98434--98662	41	5.6	41	91	4	340	36	21	19	22	1.95
98503--98653	21	7.3	21	71	4	128	35	23	19	21	1.96
99959--100007	25	2.0	25	88	8	73	46	0	2	51	1.12

Tables:   1

The End!