genome.fa.s3826.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003826.1 Hibiscus syriacus cultivar Beakdansim tig00008204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93003

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
882--919	20	1.9	20	88	0	58	31	10	23	34	1.89
10215--10255	21	1.9	22	85	5	57	53	9	2	34	1.47
12107--12145	18	2.2	18	95	0	69	25	10	12	51	1.71
13334--13379	19	2.4	19	85	7	58	45	2	6	45	1.41
15992--16025	16	2.1	16	94	0	59	29	14	5	50	1.67
19549--19585	11	3.5	11	82	17	51	29	0	0	70	0.88
19549--19581	11	2.9	12	91	8	52	27	0	0	72	0.85
22710--22756	22	2.1	22	88	4	67	44	2	0	53	1.12
22704--22784	32	2.5	32	80	13	94	46	2	0	50	1.14
22936--22980	23	2.0	23	86	0	63	53	2	2	42	1.25
23302--23358	29	2.0	29	86	6	80	35	19	1	43	1.61
28379--28408	14	2.2	14	94	5	53	53	0	0	46	1.00
30435--30463	2	14.5	2	100	0	58	48	0	0	51	1.00
30744--30818	16	4.7	16	93	0	123	18	32	25	24	1.97
30761--30818	8	7.2	8	75	21	59	18	34	24	22	1.96
30744--30818	32	2.3	32	97	0	141	18	32	25	24	1.97
31126--31326	22	9.1	22	77	4	154	27	48	22	0	1.57
31127--31323	40	5.0	40	77	9	172	26	49	22	1	1.57
31243--31327	30	2.9	28	72	10	80	25	47	23	3	1.68
31127--31317	18	10.5	18	77	9	156	26	49	23	1	1.57
43797--43878	36	2.3	36	93	0	137	60	9	14	14	1.57
47729--47812	34	2.5	34	88	7	118	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47751--47815	34	1.9	34	96	0	121	38	0	0	61	0.96
59651--59688	19	2.0	20	85	15	53	5	34	0	60	1.19
60658--60721	21	3.0	21	86	4	92	23	25	23	28	2.00
61595--61627	3	11.0	3	100	0	66	66	0	0	33	0.92
61660--61707	16	2.8	18	84	12	73	31	4	33	31	1.77
65150--65556	198	2.1	198	97	0	760	30	15	15	38	1.89
70124--70174	22	2.3	22	93	0	84	17	37	23	21	1.94
77979--78017	20	2.1	18	90	9	60	58	2	0	38	1.12
80135--80191	25	2.2	26	84	3	71	40	0	7	52	1.28

Tables:   1

The End!