Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003827.1 Hibiscus syriacus cultivar Beakdansim tig00008205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71767

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3536--3567
17
1.9
16
93
6
55
56
0
0
43
0.99
3530--3599
30
2.4
29
76
9
70
51
0
0
48
1.00
3562--3606
17
2.7
17
89
3
65
46
2
0
51
1.13
3530--3628
44
2.3
44
81
10
107
47
1
0
51
1.07
3727--3759
14
2.4
14
95
5
59
45
0
0
54
0.99
3788--3845
25
2.3
25
82
8
64
53
1
0
44
1.10
4124--4152
13
2.1
14
93
6
51
37
10
6
44
1.65
6434--6597
56
2.8
58
80
6
181
34
8
14
42
1.75
7017--7159
71
2.0
71
95
0
259
38
9
13
38
1.78
7483--7553
24
2.9
25
87
2
99
28
22
23
25
2.00
7696--7756
15
4.1
15
80
2
70
39
18
6
36
1.76
9759--9846
3
30.7
3
81
13
105
37
0
0
62
0.95
9759--9846
20
4.6
20
76
21
98
37
0
0
62
0.95
11219--11245
3
9.0
3
100
0
54
33
0
0
66
0.92
11315--11641
155
2.1
160
85
7
445
40
5
5
48
1.49
11364--11678
155
2.0
155
82
4
386
40
5
6
47
1.52
20220--20362
64
2.2
63
85
3
187
33
19
23
23
1.97
21061--21140
23
3.6
23
85
5
103
18
21
27
32
1.97
25309--25357
17
2.8
18
75
15
57
85
4
6
4
0.81
25312--25364
20
2.7
20
80
14
56
84
3
5
5
0.85
25712--25749
18
2.1
18
95
0
67
31
7
5
55
1.51
26372--26480
22
5.0
21
84
8
130
39
11
12
35
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26374--26480
44
2.4
44
89
3
153
39
12
13
35
1.81
26996--27089
38
2.5
38
87
5
136
43
9
27
19
1.82
27038--27298
123
2.1
122
90
2
416
39
14
19
25
1.90
27196--27388
84
2.3
83
85
2
271
40
16
13
29
1.86
27784--27883
3
34.0
3
89
7
134
36
0
1
63
1.02
43008--43054
2
24.0
2
95
4
87
51
0
0
48
1.00
51450--51547
20
4.9
20
87
2
126
23
17
23
35
1.95
52699--52728
2
15.0
2
100
0
60
50
0
0
50
1.00
56108--56158
22
2.3
22
100
0
102
47
0
7
45
1.32
56354--56404
27
2.0
26
84
7
68
54
0
5
39
1.24
56802--56826
11
2.3
11
100
0
50
28
28
20
24
1.99
60966--61024
16
3.7
16
71
13
50
42
33
13
10
1.78
61738--61847
46
2.4
45
81
4
141
45
23
12
18
1.83
61867--61957
32
2.8
32
85
3
121
38
27
10
23
1.88
62278--62309
15
2.1
15
100
0
64
62
12
6
18
1.50
62351--62427
33
2.4
32
89
4
127
44
15
9
31
1.78
62416--62457
21
2.0
21
95
0
75
47
7
14
30
1.71
70235--70277
2
21.0
2
95
4
77
48
0
48
2
1.14

Tables:   1

The End!