Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003828.1 Hibiscus syriacus cultivar Beakdansim tig00008207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152591

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5067--5094
8
3.5
8
100
0
56
39
0
10
50
1.37
8563--8612
7
6.5
8
88
6
61
78
0
10
12
0.98
8563--8604
14
2.9
15
89
7
68
78
0
7
14
0.95
9538--10246
55
12.9
55
89
1
985
31
15
24
28
1.96
18055--18081
4
6.8
4
100
0
54
0
48
0
51
1.00
22404--22436
14
2.4
14
100
0
66
48
6
0
45
1.27
22830--22871
14
3.0
14
85
0
57
47
2
23
26
1.64
36772--36812
15
2.8
16
89
10
61
14
4
0
80
0.87
40963--41011
23
2.1
23
84
3
62
34
26
16
22
1.95
49838--50019
60
3.1
59
79
7
190
32
20
4
42
1.73
50173--50322
60
2.5
59
79
5
176
37
5
22
35
1.77
52184--52217
16
2.1
16
88
0
50
47
2
2
47
1.32
60509--60537
2
14.5
2
100
0
58
48
0
0
51
1.00
64694--64753
30
2.2
25
73
26
68
45
16
6
31
1.74
64961--64993
2
16.5
2
100
0
66
48
0
0
51
1.00
65259--65300
19
2.2
19
100
0
84
40
26
11
21
1.88
73427--73470
17
2.6
17
77
0
52
59
0
0
40
0.98
77258--77428
29
6.0
28
75
13
154
36
1
12
49
1.51
79097--79209
31
3.6
31
76
5
102
48
0
7
43
1.36
80115--80188
26
2.8
26
95
0
139
22
17
24
35
1.95
83655--83778
63
2.0
63
93
0
212
21
9
46
21
1.80
84675--84727
24
2.2
24
83
6
63
15
3
60
20
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91703--91737
18
1.9
18
88
0
52
28
17
0
54
1.43
93030--93070
18
2.3
18
86
0
55
14
14
48
21
1.80
93022--93089
31
2.2
31
86
0
100
16
17
47
19
1.83
93048--93083
13
2.8
13
91
0
63
16
13
50
19
1.79
96862--96896
18
1.9
18
88
0
52
28
17
0
54
1.43
98187--98215
13
2.2
13
100
0
58
20
24
37
17
1.93
114873--115009
59
2.3
59
79
3
150
34
18
15
32
1.92
115212--115249
14
2.7
15
88
8
53
76
0
2
21
0.91
117204--117492
77
3.6
77
80
10
328
42
11
13
32
1.79
117395--117443
23
2.1
23
88
0
71
38
10
18
32
1.84
117328--117497
87
2.0
87
89
0
259
42
10
12
35
1.76
117714--117754
21
2.0
21
90
0
64
41
19
0
39
1.52
117801--118066
125
2.1
125
89
1
399
42
12
12
32
1.80
122176--122218
17
2.6
16
76
20
52
27
0
6
65
1.18
125555--125641
35
2.5
34
80
12
97
54
10
8
27
1.62
129489--129569
24
3.2
24
64
16
65
34
3
12
49
1.58
131273--131303
16
1.9
16
100
0
62
58
22
12
6
1.58
131370--131444
10
7.7
10
67
21
52
56
21
13
9
1.65
131374--131438
16
4.1
16
91
0
112
55
23
13
7
1.64
134847--134875
13
2.1
14
93
6
51
13
20
17
48
1.81
144352--144397
22
2.1
22
84
4
58
54
10
2
32
1.47
146240--146277
17
2.2
18
95
4
69
26
10
13
50
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
147458--147503
19
2.4
19
85
7
58
45
2
6
45
1.41
150088--150121
16
2.1
16
94
0
59
29
14
5
50
1.67

Tables:   1

The End!