Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003829.1 Hibiscus syriacus cultivar Beakdansim tig00008208_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65837

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14546--14607
27
2.3
27
77
0
70
43
0
4
51
1.23
15413--15464
18
3.1
16
73
13
50
30
34
11
23
1.90
26791--26828
13
3.1
12
82
17
51
73
0
2
23
0.95
27912--27954
2
21.5
2
100
0
86
51
0
0
48
1.00
35893--35929
3
12.7
3
94
5
67
29
0
0
70
0.88
40385--40444
25
2.4
25
91
0
102
30
16
13
40
1.87
42802--42838
13
2.8
13
83
0
56
18
45
21
13
1.84
42841--42871
7
4.3
7
92
8
53
12
35
25
25
1.92
42838--42872
15
2.3
15
100
0
70
14
37
25
22
1.92
42838--42892
7
6.6
9
84
16
50
18
34
23
23
1.96
44167--44202
18
2.0
18
88
0
54
52
0
16
30
1.44
45357--45430
23
3.2
23
83
9
96
24
17
21
36
1.95
45363--45437
24
3.2
24
88
1
116
25
17
21
36
1.95
47142--47196
22
2.5
22
96
0
101
38
0
9
52
1.33
50517--50567
26
2.0
26
96
0
93
37
3
13
45
1.63
51118--51202
44
1.9
45
85
2
118
27
27
18
27
1.98
52034--52062
4
7.2
4
100
0
58
51
0
0
48
1.00
53892--53949
2
29.0
2
100
0
116
50
0
0
50
1.00
55115--55314
65
3.1
65
82
10
207
28
17
22
32
1.96
55891--55915
2
12.5
2
100
0
50
52
0
0
48
1.00
56166--56225
29
2.0
31
90
6
97
35
6
16
41
1.75
56290--56355
19
3.5
19
93
0
105
40
10
12
36
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58852--58933
23
3.6
22
70
11
60
26
23
25
24
2.00
62727--62766
21
1.9
21
85
10
55
35
7
2
55
1.42
64716--64875
65
2.5
65
86
3
207
29
18
22
29
1.98

Tables:   1

The End!