genome.fa.s383.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000383.1 Hibiscus syriacus cultivar Beakdansim tig00000704_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64435

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7798--7848	6	8.8	6	87	6	52	35	0	49	15	1.45
7798--7851	12	4.7	12	81	6	58	35	0	48	16	1.47
8088--8138	25	2.0	25	100	0	102	35	7	19	37	1.81
14502--14574	37	2.0	37	97	0	137	36	2	35	24	1.70
19507--19616	49	2.2	51	82	7	129	70	3	9	16	1.27
19545--19627	42	2.0	41	84	15	109	71	3	10	14	1.27
21180--21204	5	5.0	5	100	0	50	60	0	0	40	0.97
21736--22394	36	18.4	36	89	1	921	38	11	24	25	1.89
21788--21845	15	3.2	19	72	23	61	41	12	22	24	1.87
21864--21928	21	3.4	21	70	24	61	36	10	26	26	1.89
22114--22178	21	3.4	21	64	24	61	35	10	29	24	1.89
22330--22389	19	3.3	19	68	22	56	40	11	21	26	1.88
22403--22949	83	6.6	82	78	6	514	26	19	23	31	1.98
26952--27053	41	2.4	43	84	11	131	69	2	11	15	1.30
27473--27561	44	2.0	46	82	12	114	68	0	5	25	1.11
28631--28655	5	5.0	5	100	0	50	60	0	0	40	0.97
29925--29978	20	2.7	19	75	8	63	33	31	18	16	1.93
29965--30097	20	6.5	20	70	14	74	36	22	19	21	1.95
30028--30245	20	10.8	20	75	9	129	38	23	19	18	1.93
30089--30301	20	10.4	20	75	2	174	39	22	18	19	1.92
30089--30303	40	5.3	41	82	1	263	39	22	18	19	1.93
32008--32388	94	4.1	94	95	1	649	21	12	18	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32452--32527	19	3.8	21	78	7	70	48	23	17	10	1.78
32476--32537	19	3.3	19	88	4	90	43	27	17	11	1.83
32537--32630	33	2.8	33	96	0	170	11	22	21	44	1.84
32534--32630	19	5.6	19	70	22	97	11	22	21	44	1.84
33107--33173	21	3.2	21	66	6	55	23	35	20	19	1.95
33055--33173	42	2.8	42	81	5	107	22	36	18	22	1.95
34520--34555	14	2.6	14	95	0	63	33	0	22	44	1.53
34662--34741	33	2.4	33	85	0	106	47	18	20	13	1.82
34751--34917	33	4.8	33	80	9	181	15	21	18	44	1.87
34784--34856	20	3.7	19	83	5	92	16	21	20	41	1.90
34843--34903	14	4.0	14	69	19	50	16	21	18	44	1.87
34749--34884	73	1.9	72	87	1	200	15	22	19	43	1.88
37369--37420	24	2.2	24	82	0	59	36	21	19	23	1.95
38271--38361	20	4.6	20	84	6	80	29	21	19	28	1.98
38269--38440	40	4.3	40	76	9	129	25	20	21	33	1.97
38316--38440	20	6.2	20	85	3	135	21	19	22	36	1.95
38348--38498	41	3.7	41	79	4	155	21	17	23	36	1.95
38331--38476	61	2.4	61	85	6	181	22	18	22	36	1.95
38368--38476	20	5.3	20	79	10	105	22	17	23	36	1.94
38363--38499	61	2.2	60	81	6	159	22	18	24	35	1.96
38485--38537	20	2.7	20	91	5	81	13	18	24	43	1.86
39765--39798	16	2.1	16	88	0	50	50	0	2	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39840--39873	16	2.0	18	88	11	54	26	2	5	64	1.30
40337--40584	130	1.9	130	92	0	415	35	13	15	36	1.86
40983--41058	35	2.2	35	90	0	116	36	1	22	39	1.63
47991--48031	8	5.2	8	77	16	50	36	0	26	36	1.57
47991--48033	15	2.8	15	76	16	52	39	0	25	34	1.56
48102--48729	128	4.9	128	96	0	1134	23	23	18	33	1.97
49107--49187	28	3.0	27	76	7	83	41	4	7	45	1.53
49152--49252	34	3.0	34	85	0	139	38	2	3	54	1.34
49770--49863	21	4.5	21	92	5	145	20	27	34	18	1.95
49867--49914	21	2.3	21	85	0	60	22	12	39	25	1.89
51642--51726	32	2.6	32	79	5	89	58	2	0	38	1.11
51642--51717	35	2.3	34	81	6	93	60	1	0	38	1.05
51670--51747	34	2.3	34	80	10	88	64	5	0	30	1.15
51927--52024	50	2.0	50	81	4	117	19	32	30	17	1.95
53239--53279	17	2.3	19	79	12	50	24	2	4	68	1.22
58493--58542	19	2.6	19	83	3	64	46	0	0	54	1.00
58641--58684	22	2.0	23	86	4	63	45	0	2	52	1.13
58646--58691	22	2.1	22	83	0	56	47	0	2	50	1.13
62364--62402	17	2.4	17	95	4	71	51	5	0	43	1.24
64037--64080	20	2.2	20	91	0	70	40	2	2	54	1.25

Tables:   1

The End!