Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003830.1 Hibiscus syriacus cultivar Beakdansim tig00008210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87000

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1972--2152
41
4.4
41
84
6
224
29
20
14
34
1.93
1972--2187
82
2.6
82
79
7
249
33
20
13
32
1.92
13346--13375
7
4.4
7
91
8
53
16
30
26
26
1.97
13347--13372
13
2.0
13
100
0
52
15
30
23
30
1.95
17296--17364
24
3.0
24
76
17
67
31
17
26
24
1.97
21025--21050
13
2.0
13
100
0
52
69
0
30
0
0.89
21514--21584
21
3.4
21
90
0
106
21
5
21
52
1.67
25778--25810
16
2.0
17
88
5
50
15
24
18
42
1.88
36151--36191
21
2.0
21
90
0
64
43
0
17
39
1.49
41441--41505
28
2.3
28
84
5
78
40
15
1
43
1.56
46635--46714
39
2.1
39
100
0
160
27
10
33
28
1.89
52990--53042
23
2.3
23
83
6
63
13
16
11
58
1.63
53658--53711
27
2.0
28
92
3
92
37
12
1
48
1.53
54282--54322
21
2.0
21
86
9
59
53
0
0
46
1.00
54640--54775
60
2.3
57
79
8
139
34
23
5
36
1.77
54810--54922
59
1.9
60
83
5
149
43
5
20
30
1.74
66743--66807
21
3.1
21
72
14
64
35
0
23
41
1.55
69343--69461
51
2.3
51
83
0
148
26
1
36
35
1.67
69385--69461
25
3.0
25
73
3
82
22
1
36
40
1.62
72970--73009
21
1.9
21
100
0
80
40
7
0
52
1.30
73781--73833
21
2.5
21
79
11
63
28
15
32
24
1.95

Tables:   1

The End!