Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003831.1 Hibiscus syriacus cultivar Beakdansim tig00008213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75810
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:6952 original size:42 final size:42
Alignment explanation
Indices: 6893--7012 Score: 204
Period size: 42 Copynumber: 2.9 Consensus size: 42
6883 TTTCCCCGAA
*
6893 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATATT
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACATT
* *
6935 TTCCCGTATTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACATT
*
6977 TTCCCGTGTTTATTTCACGTAATTCGTTTTCCGGAA
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
7013 TGTAATTCAT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.44
Consensus pattern (42 bp):
TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACATT
Found at i:7309 original size:29 final size:27
Alignment explanation
Indices: 7276--7369 Score: 84
Period size: 29 Copynumber: 3.3 Consensus size: 27
7266 CAATTATATT
7276 ATAATATATAAGATTATATTTTTATTTTA
1 ATAATATATAA-ATTAT-TTTTTATTTTA
7305 ATAATATAATAAATT-TTTTTATATATTTA
1 ATAATAT-ATAAATTATTTTT-TAT-TTTA
* *
7334 ATAATGA-ATAATATTATTTATATATTTCA
1 ATAAT-ATATAA-ATTATTT-TTTATTTTA
7363 ATAATAT
1 ATAATAT
7370 TTTAGTAAAG
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
27 4 0.07
28 9 0.16
29 30 0.55
30 11 0.20
31 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (27 bp):
ATAATATATAAATTATTTTTTATTTTA
Found at i:7353 original size:28 final size:29
Alignment explanation
Indices: 7283--7368 Score: 88
Period size: 28 Copynumber: 2.9 Consensus size: 29
7273 ATTATAATAT
* *
7283 ATAAGATTATATTTTTAT-TTTAATAATATA
1 ATAA-ATT-TATTTATATATTTAATAATAGA
*
7313 ATAAATTTTTTTATATATTTAATAAT-GA
1 ATAAATTTATTTATATATTTAATAATAGA
7341 AT-AATATTATTTATATATTTCAATAATA
1 ATAAAT-TTATTTATATATTT-AATAATA
7369 TTTTAGTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
27 3 0.06
28 23 0.48
29 18 0.38
30 4 0.08
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (29 bp):
ATAAATTTATTTATATATTTAATAATAGA
Found at i:7580 original size:19 final size:19
Alignment explanation
Indices: 7536--7592 Score: 96
Period size: 19 Copynumber: 2.9 Consensus size: 19
7526 AGATGTTTTC
*
7536 CAGAAATGTAATTCATTTTC
1 CAGAAATGTAATTCA-TTTA
7556 CAGAAATGTAATTCATTTA
1 CAGAAATGTAATTCATTTA
7575 CAGAAATGTAATTCATTT
1 CAGAAATGTAATTCATTT
7593 TCCAGAATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
19 21 0.58
20 15 0.42
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.39
Consensus pattern (19 bp):
CAGAAATGTAATTCATTTA
Found at i:7608 original size:20 final size:20
Alignment explanation
Indices: 7531--7599 Score: 122
Period size: 20 Copynumber: 3.5 Consensus size: 20
7521 TTTCCAGATG
7531 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
7551 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
*
7571 -TTTACAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
7590 TTTTCCAGAA
1 TTTTCCAGAA
7600 TTCAAATTCT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.39
20 28 0.61
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (20 bp):
TTTTCCAGAAATGTAATTCA
Found at i:7634 original size:30 final size:30
Alignment explanation
Indices: 7582--7663 Score: 121
Period size: 30 Copynumber: 2.8 Consensus size: 30
7572 TTACAGAAAT
*
7582 GTAATTCATTTTCCAG-AATTCAAATTCTA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
7611 GTAATTCATTTTCCAGTAATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
** *
7641 GTAATTCAAATTCTAGTAATTCA
1 GTAATTCATTTTCCAGTAATTCA
7664 TTTTCTGGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
29 16 0.33
30 32 0.67
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.40
Consensus pattern (30 bp):
GTAATTCATTTTCCAGTAATTCAAATTCCA
Found at i:7656 original size:45 final size:44
Alignment explanation
Indices: 7582--7668 Score: 147
Period size: 45 Copynumber: 2.0 Consensus size: 44
7572 TTACAGAAAT
**
7582 GTAATTCATTTTCCAGAATTCAAATTCTAGTAATTCATTTTCCA
1 GTAATTCAAATTCCAGAATTCAAATTCTAGTAATTCATTTTCCA
7626 GTAATTCAAATTCCAGTAATTCAAATTCTAGTAATTCATTTTC
1 GTAATTCAAATTCCAG-AATTCAAATTCTAGTAATTCATTTTC
7669 TGGAAAACCA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 14 0.35
45 26 0.65
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (44 bp):
GTAATTCAAATTCCAGAATTCAAATTCTAGTAATTCATTTTCCA
Found at i:7669 original size:15 final size:15
Alignment explanation
Indices: 7582--7663 Score: 103
Period size: 15 Copynumber: 5.5 Consensus size: 15
7572 TTACAGAAAT
**
7582 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
*
7597 G-AATTCAAATTCTA
1 GTAATTCAAATTCCA
**
7611 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
7626 GTAATTCAAATTCCA
1 GTAATTCAAATTCCA
*
7641 GTAATTCAAATTCTA
1 GTAATTCAAATTCCA
7656 GTAATTCA
1 GTAATTCA
7664 TTTTCTGGAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
14 11 0.19
15 46 0.81
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.40
Consensus pattern (15 bp):
GTAATTCAAATTCCA
Found at i:7848 original size:17 final size:18
Alignment explanation
Indices: 7826--7865 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
7816 ATAATTCTAA
*
7826 ATTAAAACCTT-TAATTT
1 ATTAAAACATTATAATTT
7843 ATTAAAACATTATAATTT
1 ATTAAAACATTATAATTT
7861 ATTAA
1 ATTAA
7866 TATAGAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTAAAACATTATAATTT
Found at i:8188 original size:32 final size:31
Alignment explanation
Indices: 8152--8211 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
8142 ATTCATATTT
8152 AAATTCATATAAAAAATAAATCTTTATAATAA
1 AAATTCATATAAAAAATAAATC-TTATAATAA
* * *
8184 AAATTTATATTATAAATAAATCTTATAA
1 AAATTCATATAAAAAATAAATCTTATAA
8212 AATTTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 6 0.24
32 19 0.76
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (31 bp):
AAATTCATATAAAAAATAAATCTTATAATAA
Found at i:8209 original size:18 final size:18
Alignment explanation
Indices: 8158--8210 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 18
8148 ATTTAAATTC
*
8158 ATATAAAAAATAAATCTT
1 ATATAATAAATAAATCTT
8176 -TATAAT-AA-AAAT-TT
1 ATATAATAAATAAATCTT
*
8190 ATATTATAAATAAATCTT
1 ATATAATAAATAAATCTT
8208 ATA
1 ATA
8211 AAATTTTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 2 0.07
15 9 0.31
16 4 0.14
17 9 0.31
18 5 0.17
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATAATAAATAAATCTT
Found at i:15221 original size:35 final size:35
Alignment explanation
Indices: 15176--15246 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
15166 AGATTGAAAG
*
15176 AATAATAATTCCAGGTCTATATATACCAAATATAT
1 AATAACAATTCCAGGTCTATATATACCAAATATAT
15211 AATAACAATTCCAGGTCTATATATACCAAATATAT
1 AATAACAATTCCAGGTCTATATATACCAAATATAT
15246 A
1 A
15247 CATTTCAAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.32
Consensus pattern (35 bp):
AATAACAATTCCAGGTCTATATATACCAAATATAT
Found at i:19339 original size:3 final size:3
Alignment explanation
Indices: 19331--19434 Score: 138
Period size: 3 Copynumber: 34.3 Consensus size: 3
19321 CTAATATATA
*
19331 TAT TAT TAT AAT TACT TAT TAT TAT TAAT TAT TAT TAT TAT TAT TA-
1 TAT TAT TAT TAT TA-T TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * *
19377 TAT TAT TAT TAT TAT TAT TAA TAT TTT TAT TAT TAT TAT TAA TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
19425 TAT TAT TAT T
1 TAT TAT TAT T
19435 TTTGCAGGGT
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
2 2 0.02
3 80 0.91
4 6 0.07
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:20460 original size:14 final size:14
Alignment explanation
Indices: 20443--20486 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
20433 ACCCATAGTT
20443 TTGTTTT-TTATATA
1 TTGTTTTATTAT-TA
20457 TTGTTTTATTATTA
1 TTGTTTTATTATTA
*
20471 TTATTATTATTATTA
1 TTGTT-TTATTATTA
20486 T
1 T
20487 AAATTTTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 13 0.48
15 14 0.52
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (14 bp):
TTGTTTTATTATTA
Found at i:20470 original size:3 final size:3
Alignment explanation
Indices: 20462--20486 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
20452 ATATATTGTT
20462 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
20487 AAATTTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:22973 original size:3 final size:3
Alignment explanation
Indices: 22953--23035 Score: 55
Period size: 3 Copynumber: 28.0 Consensus size: 3
22943 AGAAATAAAA
* * * * *
22953 ATT A-T ATT ATA ATA ATT ATT A-T ATT ATA ATT ATA ATT ATT ATAA
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T
* * *
22997 ATT ATT ATT ATT AGT ATT AAT ATT ATGT -TT ATT TTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
23036 TCTTGCAAGC
Statistics
Matches: 61, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
2 5 0.08
3 53 0.87
4 3 0.05
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:22990 original size:17 final size:17
Alignment explanation
Indices: 22946--22991 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
22936 TTATCCGAGA
*
22946 AATAAAAATTATATTAT
1 AATAATAATTATATTAT
*
22963 AATAATTATTATATTAT
1 AATAATAATTATATTAT
*
22980 AATTATAATTAT
1 AATAATAATTAT
22992 TATAAATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
AATAATAATTATATTAT
Found at i:23075 original size:41 final size:41
Alignment explanation
Indices: 23030--23115 Score: 163
Period size: 41 Copynumber: 2.1 Consensus size: 41
23020 TATGTTTATT
23030 TTTATTTCTTGCAAGCATTACAACAAGCCCAACTAGACCCA
1 TTTATTTCTTGCAAGCATTACAACAAGCCCAACTAGACCCA
*
23071 TTTATTTCTTGCAGGCATTACAACAAGCCCAACTAGACCCA
1 TTTATTTCTTGCAAGCATTACAACAAGCCCAACTAGACCCA
23112 TTTA
1 TTTA
23116 CAAAGAGTCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.29
Consensus pattern (41 bp):
TTTATTTCTTGCAAGCATTACAACAAGCCCAACTAGACCCA
Found at i:25839 original size:15 final size:17
Alignment explanation
Indices: 25805--25839 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
25795 TTCCAAACTT
25805 GAGATTGCAAAGGAAGA
1 GAGATTGCAAAGGAAGA
25822 GAGATTGCAAAGGAAGA
1 GAGATTGCAAAGGAAGA
25839 G
1 G
25840 TTCGAAGCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.06, G:0.37, T:0.11
Consensus pattern (17 bp):
GAGATTGCAAAGGAAGA
Found at i:28073 original size:18 final size:18
Alignment explanation
Indices: 28050--28095 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
28040 TTACATAGTA
28050 GTATCGGTACCCCTTTGG
1 GTATCGGTACCCCTTTGG
28068 GTATCGGTACCCCTTTGG
1 GTATCGGTACCCCTTTGG
28086 GTATCGGTAC
1 GTATCGGTAC
28096 TATTTTTGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.13, C:0.26, G:0.28, T:0.33
Consensus pattern (18 bp):
GTATCGGTACCCCTTTGG
Found at i:29619 original size:31 final size:31
Alignment explanation
Indices: 29581--29657 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
29571 TGTGAATTGA
*
29581 GTTAAATTAATCTTTTAT-TTAAAGTTTAAGG
1 GTTAAATTAATATTTTATCTT-AAGTTTAAGG
*
29612 GTTAAATTAATATTTTATCTTAAGTTTAGGG
1 GTTAAATTAATATTTTATCTTAAGTTTAAGG
29643 GTTAAATTAATATTT
1 GTTAAATTAATATTT
29658 GGGCTGATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
31 41 0.95
32 2 0.05
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (31 bp):
GTTAAATTAATATTTTATCTTAAGTTTAAGG
Found at i:31894 original size:135 final size:135
Alignment explanation
Indices: 31672--31914 Score: 369
Period size: 135 Copynumber: 1.8 Consensus size: 135
31662 GTTGATTCGA
* * * * * * *
31672 AGGCTTTCGGGTTTGAATTTGGCAAAACGGACTTTGGAATTAGACTCAAGACATCGAAAAACATA
1 AGGCTTTAGGGTTCGAATTTGGAAAAACGAACTTCGGAATCAGACTCAAGACATCAAAAAACATA
*
31737 AAATATAACTTTTCAAAAAATTTGAATTTTTGGTCAAAGTCAAAGTCAATGGGTTTGACTGATAA
66 AAATACAACTTTTCAAAAAATTTGAATTTTTGGTCAAAGTCAAAGTCAATGGGTTTGACTGATAA
31802 TTTGG
131 TTTGG
* * *
31807 AGGCTTTAGGGTTCGAATTTGGAAAAACGAACTTCGGAATCAGACTCAGGACGTCAAAAAATATA
1 AGGCTTTAGGGTTCGAATTTGGAAAAACGAACTTCGGAATCAGACTCAAGACATCAAAAAACATA
* *
31872 AAATACGACTTTTCAAAAAATTTGACTTTTTGGTCAAAGTCAA
66 AAATACAACTTTTCAAAAAATTTGAATTTTTGGTCAAAGTCAA
31915 CGGTCAACGG
Statistics
Matches: 95, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
135 95 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (135 bp):
AGGCTTTAGGGTTCGAATTTGGAAAAACGAACTTCGGAATCAGACTCAAGACATCAAAAAACATA
AAATACAACTTTTCAAAAAATTTGAATTTTTGGTCAAAGTCAAAGTCAATGGGTTTGACTGATAA
TTTGG
Found at i:36197 original size:19 final size:19
Alignment explanation
Indices: 36173--36236 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
36163 GGGTCGAACC
36173 GGTTCAAACCATTCAAACT
1 GGTTCAAACCATTCAAACT
36192 GGTTCAAACCATTCAAACT
1 GGTTCAAACCATTCAAACT
*
36211 GGTTCAGACCGA-TCAAAC-
1 GGTTCAAACC-ATTCAAACT
36229 GG-TCAAAC
1 GGTTCAAAC
36237 AGTCAAAACT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.12
18 2 0.05
19 34 0.81
20 1 0.02
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.22
Consensus pattern (19 bp):
GGTTCAAACCATTCAAACT
Found at i:41859 original size:27 final size:27
Alignment explanation
Indices: 41821--41876 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
41811 TCCTTCTCCC
*
41821 ATCCTTGTACTCAATCGATAATATTAT
1 ATCCTTATACTCAATCGATAATATTAT
41848 ATCCTTATACTCAATCGATAATATTAT
1 ATCCTTATACTCAATCGATAATATTAT
41875 AT
1 AT
41877 GAGTTTCATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (27 bp):
ATCCTTATACTCAATCGATAATATTAT
Found at i:44113 original size:2 final size:2
Alignment explanation
Indices: 44106--44139 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
44096 TGTACGGAGA
44106 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44140 GCACACGCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44385 original size:3 final size:3
Alignment explanation
Indices: 44377--44401 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
44367 GTAGCAGAGA
44377 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
44402 ATGTTGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:46825 original size:19 final size:19
Alignment explanation
Indices: 46801--46903 Score: 84
Period size: 19 Copynumber: 5.2 Consensus size: 19
46791 ACGATTTTGA
46801 AAAATGTGTTGCGATAGTT
1 AAAATGTGTTGCGATAGTT
*
46820 AAAATGTGTTGTGATAGTT
1 AAAATGTGTTGCGATAGTT
* *
46839 AAAA--TGTTGTGAGAGTTT
1 AAAATGTGTTGCGATAG-TT
*
46857 GAAAAACGTGTTGTTGCGATAGTG
1 --AAAA--TG-TGTTGCGATAGTT
* *
46881 AAAAAGTGTTGCGATAGTG
1 AAAATGTGTTGCGATAGTT
46900 AAAA
1 AAAA
46904 ATCCAAAATA
Statistics
Matches: 70, Mismatches: 6, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
17 10 0.14
18 2 0.03
19 39 0.56
20 5 0.07
22 4 0.06
24 1 0.01
25 9 0.13
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (19 bp):
AAAATGTGTTGCGATAGTT
Found at i:47051 original size:65 final size:65
Alignment explanation
Indices: 46946--47124 Score: 349
Period size: 65 Copynumber: 2.8 Consensus size: 65
46936 ATTCACGTGG
*
46946 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTTAAAGATTCCCAAGCCATTTGTAAGATCTT
1 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAAGCCATTTGTAAGATCTT
47011 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAAGCCATTTGTAAGATCTT
1 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAAGCCATTTGTAAGATCTT
47076 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAAG
1 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAAG
47125 TTTTTGCAAT
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 113 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (65 bp):
AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAAGCCATTTGTAAGATCTT
Found at i:47405 original size:21 final size:21
Alignment explanation
Indices: 47381--47511 Score: 117
Period size: 21 Copynumber: 6.4 Consensus size: 21
47371 ATTTTGGAAA
*
47381 ATCGCAACGCGAACTTAGACT
1 ATCGCAACGCGAACTTGGACT
* **
47402 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
*
47421 ATCGCAATGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
* * * **
47442 ATTGCAA--CAAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
*
47461 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
* *
47482 ATTGCAACGTGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
47503 ATCGCAACG
1 ATCGCAACG
47512 AATTTGGACT
Statistics
Matches: 84, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
19 29 0.35
21 55 0.65
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (21 bp):
ATCGCAACGCGAACTTGGACT
Found at i:47424 original size:19 final size:19
Alignment explanation
Indices: 47373--47469 Score: 77
Period size: 19 Copynumber: 4.9 Consensus size: 19
47363 TCGTTGCGAT
47373 TTTGGAAAATCGCAACGCGAA
1 TTTGGAAAATCGCAA--CGAA
* * **
47394 CTTAGACTATCGCAACGAA
1 TTTGGAAAATCGCAACGAA
47413 TTTGGAAAATCGCAATGCGAA
1 TTTGGAAAATCGCAA--CGAA
* ** * *
47434 CTTGGACTATTGCAACAAA
1 TTTGGAAAATCGCAACGAA
47453 TTTGGAAAATCGCAACG
1 TTTGGAAAATCGCAACG
47470 CGAACTTCGA
Statistics
Matches: 56, Mismatches: 18, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
19 30 0.54
21 26 0.46
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (19 bp):
TTTGGAAAATCGCAACGAA
Found at i:47433 original size:40 final size:40
Alignment explanation
Indices: 47373--47490 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
47363 TCGTTGCGAT
*
47373 TTTGGAAAATCGCAACGCGAACTTAGACTATCGCAACGAA
1 TTTGGAAAATCGCAACGCGAACTTAGACTATTGCAACGAA
* * *
47413 TTTGGAAAATCGCAATGCGAACTTGGACTATTGCAACAAA
1 TTTGGAAAATCGCAACGCGAACTTAGACTATTGCAACGAA
*
47453 TTTGGAAAATCGCAACGCGAACTTCGACTATTGCAACG
1 TTTGGAAAATCGCAACGCGAACTTAGACTATTGCAACG
47491 TGAACTTGGA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (40 bp):
TTTGGAAAATCGCAACGCGAACTTAGACTATTGCAACGAA
Found at i:47519 original size:80 final size:76
Alignment explanation
Indices: 47373--47543 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 76
47363 TCGTTGCGAT
*
47373 TTTGGAAAATCGCAACGCGAACTTAGACTATCGCAACGAATTTGGAAAATCGCAATGCGAACTTG
1 TTTGGAAAATCGCAACGCGAACTTAGACTATCGCAACGAACTTGGAAAATCGCAA-GCGAACTTG
*
47438 GACTATTGCAACAAA
65 GACTAATG---CAAA
* * ** *
47453 TTTGGAAAATCGCAACGCGAACTTCGACTATTGCAACGTGAACTTGGACTATCGCAA-CGAATTT
1 TTTGGAAAATCGCAACGCGAACTTAGACTATCGCAAC--GAACTTGGAAAATCGCAAGCGAACTT
*
47517 GGACTAATGTAAA
64 GGACTAATGCAAA
47530 TTTGGAAAATCGCA
1 TTTGGAAAATCGCA
47544 TTGCGATTTT
Statistics
Matches: 81, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
77 17 0.21
80 49 0.60
82 15 0.19
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (76 bp):
TTTGGAAAATCGCAACGCGAACTTAGACTATCGCAACGAACTTGGAAAATCGCAAGCGAACTTGG
ACTAATGCAAA
Found at i:47522 original size:40 final size:39
Alignment explanation
Indices: 47374--47522 Score: 156
Period size: 40 Copynumber: 3.7 Consensus size: 39
47364 CGTTGCGATT
* * * *
47374 TTGGAAAATCGCAACGCGAACTTAGACTATCGCAACGAAT
1 TTGGAAAATCGCAA-GCGAACTTGGACTATTGCAACAAAC
*
47414 TTGGAAAATCGCAATGCGAACTTGGACTATTGCAACAAAT
1 TTGGAAAATCGCAA-GCGAACTTGGACTATTGCAACAAAC
* *
47454 TTGGAAAATCGCAACGCGAACTTCGACTATTGCAACGTGAAC
1 TTGGAAAATCGCAA-GCGAACTTGGACTATTGCAAC--AAAC
** *
47496 TTGGACTATCGCAA-CGAATTTGGACTA
1 TTGGAAAATCGCAAGCGAACTTGGACTA
47523 ATGTAAATTT
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
40 81 0.85
42 14 0.15
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (39 bp):
TTGGAAAATCGCAAGCGAACTTGGACTATTGCAACAAAC
Found at i:47554 original size:21 final size:21
Alignment explanation
Indices: 47530--47571 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
47520 CTAATGTAAA
47530 TTTGGAAAATCGCATTGCGAT
1 TTTGGAAAATCGCATTGCGAT
* **
47551 TTTGTATTATCGCATTGCGAT
1 TTTGGAAAATCGCATTGCGAT
47572 AGTCAGAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40
Consensus pattern (21 bp):
TTTGGAAAATCGCATTGCGAT
Found at i:47588 original size:20 final size:20
Alignment explanation
Indices: 47559--47691 Score: 128
Period size: 20 Copynumber: 6.6 Consensus size: 20
47549 ATTTTGTATT
*
47559 ATCGCATTGCGATAGTCAGA
1 ATCGCGTTGCGATAGTCAGA
47579 ATCGCGTTGCGATAGTCAGA
1 ATCGCGTTGCGATAGTCAGA
* **
47599 ATCGCGTTGCGATTTTGT-ATT
1 ATCGCGTTGCGA--TAGTCAGA
47620 ATCGCGTTGCGATAGTCAGA
1 ATCGCGTTGCGATAGTCAGA
* *
47640 ATCGCGTTGGGATTTA-T-ATA
1 ATCGCGTTGCGA--TAGTCAGA
* * *
47660 TTCGCCTTGCGATAGTCAAA
1 ATCGCGTTGCGATAGTCAGA
47680 ATCGCGTTGCGA
1 ATCGCGTTGCGA
47692 ATCTAGAAAC
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
18 2 0.02
19 4 0.04
20 66 0.73
21 14 0.15
22 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGA
Found at i:47683 original size:40 final size:41
Alignment explanation
Indices: 47579--47691 Score: 167
Period size: 40 Copynumber: 2.8 Consensus size: 41
47569 GATAGTCAGA
*
47579 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATTTTATATT
*
47620 ATCGCGTTGCGATAGTCAGAATCGCGTTGGGA-TTTATA-T
1 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATTTTATATT
* *
47659 ATTCGCCTTGCGATAGTCAAAATCGCGTTGCGA
1 A-TCGCGTTGCGATAGTCAGAATCGCGTTGCGA
47692 ATCTAGAAAC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.03
40 33 0.50
41 31 0.47
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.33
Consensus pattern (41 bp):
ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATTTTATATT
Found at i:48065 original size:2 final size:2
Alignment explanation
Indices: 48058--48087 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
48048 TTAATATTTC
*
48058 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48088 TAATATGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:48785 original size:4 final size:4
Alignment explanation
Indices: 48776--48803 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
48766 AACTCTTCTT
48776 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
48804 ACATGTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:50986 original size:41 final size:41
Alignment explanation
Indices: 50961--51142 Score: 224
Period size: 41 Copynumber: 4.4 Consensus size: 41
50951 CTAAAAGTCG
* *
50961 TACTTTAGTTGCATTTATTTGACAAACGCCGCTAAATA-CTCA
1 TACTTTAGTGGCATTT-TTTGACAAACGCCGCTAAA-ACCTAA
* *
51003 TACTTTAGTGGCATTTTTAGACAAACTCCGCTAAAACCTAA
1 TACTTTAGTGGCATTTTTTGACAAACGCCGCTAAAACCTAA
* * *
51044 TACTTTAGTGGCGTTTTTTGTA-AAACGCCACTAAAACCTAG
1 TACTTTAGTGGCATTTTTTG-ACAAACGCCGCTAAAACCTAA
* * *
51085 TACTCTAGTGGCATTTTTTGACAAACGCTGCTAAAACCTAG
1 TACTTTAGTGGCATTTTTTGACAAACGCCGCTAAAACCTAA
*
51126 CACTTTAGTGGCATTTT
1 TACTTTAGTGGCATTTT
51143 AAGAAAAAAA
Statistics
Matches: 122, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
40 2 0.02
41 104 0.85
42 16 0.13
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.35
Consensus pattern (41 bp):
TACTTTAGTGGCATTTTTTGACAAACGCCGCTAAAACCTAA
Found at i:51038 original size:82 final size:81
Alignment explanation
Indices: 50960--51176 Score: 249
Period size: 82 Copynumber: 2.6 Consensus size: 81
50950 GCTAAAAGTC
* *
50960 GTACTTTAGTTGCATTTATTTGACAAACGCCGCTAAATACTCATACTTTAGTGGCATTTTTAGAC
1 GTACTTTAGTGGCATTT-TTTGA-AAACGCCACTAAATACTCATACTTTAGTGGCATTTTTAGAC
51025 AAACTCCGCTAAAACCTA
64 AAACTCCGCTAAAACCTA
* * * *
51043 ATACTTTAGTGGCGTTTTTTGTAAAACGCCACTAAA-AC-CTAGTACTCTAGTGGCATTTTTTGA
1 GTACTTTAGTGGCATTTTTTG-AAAACGCCACTAAATACTC-A-TACTTTAGTGGCATTTTTAGA
* *
51106 CAAACGCTGCTAAAACCTA
63 CAAACTCCGCTAAAACCTA
* ** **
51125 GCACTTTAGTGGCATTTTAAGAAAAAAACCACTAAATACTCATACTTTAGTG
1 GTACTTTAGTGGCATTTTTTG-AAAACGCCACTAAATACTCATACTTTAGTG
51177 ACGTTTGTAT
Statistics
Matches: 112, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
80 1 0.01
81 3 0.03
82 89 0.79
83 18 0.16
84 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (81 bp):
GTACTTTAGTGGCATTTTTTGAAAACGCCACTAAATACTCATACTTTAGTGGCATTTTTAGACAA
ACTCCGCTAAAACCTA
Found at i:51160 original size:41 final size:41
Alignment explanation
Indices: 50960--51176 Score: 181
Period size: 41 Copynumber: 5.3 Consensus size: 41
50950 GCTAAAAGTC
* * * *
50960 GTACTTTAGTTGCATTTATTTGACAAACGCCGCTAAATA-CTCA
1 GTACTTTAGTGGCATTT-TTAGAAAAACGCCACTAAA-ACCT-A
* * *
51003 -TACTTTAGTGGCATTTTTAGACAAACTCCGCTAAAACCTA
1 GTACTTTAGTGGCATTTTTAGAAAAACGCCACTAAAACCTA
* * * *
51043 ATACTTTAGTGGCGTTTTTTGTAAAACGCCACTAAAACCTA
1 GTACTTTAGTGGCATTTTTAGAAAAACGCCACTAAAACCTA
* * * **
51084 GTACTCTAGTGGCATTTTTTGACAAACGCTGCTAAAACCTA
1 GTACTTTAGTGGCATTTTTAGAAAAACGCCACTAAAACCTA
* * **
51125 GCACTTTAGTGGCATTTTAAGAAAAAAACCACTAAATA-CTCA
1 GTACTTTAGTGGCATTTTTAGAAAAACGCCACTAAA-ACCT-A
51167 -TACTTTAGTG
1 GTACTTTAGTG
51177 ACGTTTGTAT
Statistics
Matches: 144, Mismatches: 26, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
40 2 0.01
41 125 0.87
42 17 0.12
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (41 bp):
GTACTTTAGTGGCATTTTTAGAAAAACGCCACTAAAACCTA
Found at i:51160 original size:123 final size:124
Alignment explanation
Indices: 50960--51182 Score: 292
Period size: 123 Copynumber: 1.8 Consensus size: 124
50950 GCTAAAAGTC
* * * * *
50960 GTACTTTAGTTGCATTTATTTGACAAACGCCGCTAAATACTCATACTTTAGTGGCATTTTTAGAC
1 GTACTCTAGTGGCATTTATTTGACAAACGCCGCTAAATACTCACACTTTAGTGGCATTTTAAGAA
** * *
51025 AAACTCCGCTAAA-ACCTAATACTTTAGTGGCGTTTTTTGTAAAACGCCACTAAAACCTA
66 AAAAACCACTAAATA-CTAATACTTTAGTGACGTTTTTTGTAAAACGCCACTAAAACCTA
*
51084 GTACTCTAGTGGCATTT-TTTGACAAACGCTGCTAAA-AC-CTAGCACTTTAGTGGCATTTTAAG
1 GTACTCTAGTGGCATTTATTTGACAAACGCCGCTAAATACTC-A-CACTTTAGTGGCATTTTAAG
*
51146 AAAAAAACCACTAAATACTCATACTTTAGTGACGTTT
64 AAAAAAACCACTAAATACTAATACTTTAGTGACGTTT
51183 GTATTTACAA
Statistics
Matches: 85, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
121 1 0.01
122 3 0.04
123 65 0.76
124 16 0.19
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.33
Consensus pattern (124 bp):
GTACTCTAGTGGCATTTATTTGACAAACGCCGCTAAATACTCACACTTTAGTGGCATTTTAAGAA
AAAAACCACTAAATACTAATACTTTAGTGACGTTTTTTGTAAAACGCCACTAAAACCTA
Found at i:62391 original size:7 final size:7
Alignment explanation
Indices: 62379--62408 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
62369 GACCCGACCC
62379 GACCGTT
1 GACCGTT
62386 GACCGTT
1 GACCGTT
62393 -ACCGTT
1 GACCGTT
62399 GACCGTT
1 GACCGTT
62406 GAC
1 GAC
62409 TTTCTTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.17, C:0.30, G:0.27, T:0.27
Consensus pattern (7 bp):
GACCGTT
Found at i:62398 original size:13 final size:13
Alignment explanation
Indices: 62380--62405 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62370 ACCCGACCCG
62380 ACCGTTGACCGTT
1 ACCGTTGACCGTT
62393 ACCGTTGACCGTT
1 ACCGTTGACCGTT
62406 GACTTTCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (13 bp):
ACCGTTGACCGTT
Found at i:66351 original size:24 final size:24
Alignment explanation
Indices: 66319--66387 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
66309 TAGTGCATCG
66319 ATGTATAAGGAGTGCATCGATGCAC
1 ATGT-TAAGGAGTGCATCGATGCAC
*
66344 ATGTTAAGG-GATGCATCGATACAC
1 ATGTTAAGGAG-TGCATCGATGCAC
*
66368 -TG-T-A-GAATGCATCGATGCAC
1 ATGTTAAGGAGTGCATCGATGCAC
66388 TTCAAGGGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
20 13 0.33
21 1 0.03
22 1 0.03
23 3 0.08
24 17 0.44
25 4 0.10
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (24 bp):
ATGTTAAGGAGTGCATCGATGCAC
Found at i:70064 original size:13 final size:13
Alignment explanation
Indices: 70046--70072 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70036 CTTTTACGTG
70046 AAGAAGAAGAAGA
1 AAGAAGAAGAAGA
70059 AAGAAGAAGAAGA
1 AAGAAGAAGAAGA
70072 A
1 A
70073 CTCTGGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (13 bp):
AAGAAGAAGAAGA
Found at i:70550 original size:21 final size:21
Alignment explanation
Indices: 70526--70596 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
70516 GTAAACTTTG
*
70526 GTTTATTATTATGGATTTCAA
1 GTTTATTGTTATGGATTTCAA
*
70547 GTTTCTTGTTATGGATTTCAA
1 GTTTATTGTTATGGATTTCAA
* *
70568 GTTTGTTGTTATGGATGTCAA
1 GTTTATTGTTATGGATTTCAA
70589 GTTTATTG
1 GTTTATTG
70597 GATAATGCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.21, C:0.06, G:0.21, T:0.52
Consensus pattern (21 bp):
GTTTATTGTTATGGATTTCAA
Found at i:74717 original size:16 final size:17
Alignment explanation
Indices: 74698--74730 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
74688 ATTGAGTTTT
74698 TTTTATCACTAG-GTCG
1 TTTTATCACTAGCGTCG
*
74714 TTTTCTCACTAGCGTCG
1 TTTTATCACTAGCGTCG
74731 ATATAAATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.42
Consensus pattern (17 bp):
TTTTATCACTAGCGTCG
Done.