Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003832.1 Hibiscus syriacus cultivar Beakdansim tig00008218_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67265

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2096--2169
38
1.9
38
83
5
96
36
14
14
33
1.88
2188--2223
14
2.6
14
95
0
63
11
13
25
50
1.75
2201--2245
22
2.0
22
86
0
63
13
13
15
57
1.65
2967--3010
16
2.9
15
86
3
61
11
13
20
54
1.69
9010--9078
29
2.4
29
90
4
104
47
20
0
31
1.50
15775--15856
29
2.8
29
89
8
123
45
23
0
31
1.53
20589--20641
3
17.7
3
100
0
106
33
0
0
66
0.92
22795--22838
17
2.6
17
85
3
54
31
6
0
61
1.22
22844--22880
15
2.7
15
88
12
53
24
5
8
62
1.44
32150--32204
24
2.3
24
93
0
83
12
12
25
49
1.76
32153--32204
14
4.0
14
78
19
67
9
13
26
50
1.72
32167--32191
10
2.5
10
100
0
50
8
12
32
48
1.69
32159--32217
14
4.5
14
77
16
54
10
11
22
55
1.65
32952--32994
10
4.1
10
82
11
59
6
11
23
58
1.57
32972--33004
16
2.1
16
100
0
66
6
12
24
57
1.57
32956--33000
22
2.0
22
100
0
90
4
13
26
55
1.57
36249--36300
2
26.0
2
100
0
104
50
0
0
50
1.00
37767--37844
39
2.0
40
84
2
104
23
12
7
56
1.62
40071--40116
14
3.3
14
96
0
83
8
15
26
50
1.73
40086--40136
24
2.1
24
88
0
75
11
11
19
56
1.65
40863--40913
16
3.3
15
86
5
68
13
9
15
60
1.58
46957--47025
29
2.4
29
90
4
104
47
20
0
31
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53718--53799
29
2.8
29
89
8
123
45
23
0
31
1.53
58515--58568
3
16.7
3
85
11
63
38
0
0
61
0.96
58515--58568
13
4.2
13
77
15
58
38
0
0
61
0.96
60669--60712
17
2.6
17
85
3
54
31
6
0
61
1.22
60720--60757
14
2.7
15
80
12
53
21
7
5
65
1.38

Tables:   1

The End!