Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003833.1 Hibiscus syriacus cultivar Beakdansim tig00008219_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72426

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4669--4703
18
1.9
18
88
0
52
51
2
0
45
1.16
5609--5663
28
2.0
28
85
0
74
41
21
12
23
1.88
6117--6178
2
31.5
2
96
3
117
48
0
0
51
1.00
6290--6412
2
65.5
2
86
12
181
48
0
0
51
1.00
7409--7445
2
19.0
2
94
5
67
51
0
0
48
1.00
12412--12487
3
25.3
3
91
0
125
63
1
0
35
1.03
14062--14126
26
2.5
26
100
0
130
38
0
4
56
1.20
19615--19649
17
2.1
17
89
10
54
34
0
0
65
0.93
19805--19867
19
3.3
19
70
12
65
23
14
9
52
1.71
19799--19861
20
3.2
20
66
20
60
23
17
7
50
1.72
22157--22207
23
2.1
23
85
10
66
31
9
3
54
1.51
23060--23111
9
5.3
10
82
13
72
13
19
30
36
1.90
23128--23175
18
2.7
18
96
0
87
18
45
16
18
1.85
23154--23195
13
3.3
13
86
6
68
16
45
21
16
1.86
23210--23276
29
2.3
29
84
0
80
22
8
26
41
1.83
23210--23335
29
4.3
29
67
11
69
30
6
21
42
1.78
30450--30501
18
2.9
18
94
0
95
19
48
15
17
1.82
30480--30521
13
3.3
13
86
6
68
16
45
21
16
1.86
30536--30602
29
2.3
29
86
0
89
22
10
26
40
1.86
30536--30619
29
2.9
28
82
5
71
25
9
23
41
1.84
31999--32025
1
27.0
1
100
0
54
100
0
0
0
0.00
32141--32186
24
1.9
24
95
0
83
34
4
8
52
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32652--32734
40
2.1
40
88
0
121
38
13
12
36
1.82
32962--33024
2
32.0
2
96
3
119
49
0
0
50
1.00
36161--36234
3
24.3
3
88
2
112
63
1
0
35
1.03
37803--37866
26
2.5
26
95
5
114
39
0
4
56
1.20
37744--37945
65
3.1
65
66
9
187
41
1
7
49
1.42
43323--43357
17
2.1
17
89
10
54
34
0
0
65
0.93
43506--43568
19
3.3
19
68
12
56
25
15
7
50
1.71
45857--45907
23
2.1
23
85
10
66
31
9
3
54
1.51
45958--46050
47
2.0
46
93
4
161
38
7
23
30
1.82
46056--46101
24
1.9
24
95
0
83
34
4
8
52
1.52
46382--46415
16
2.0
18
88
11
54
38
5
5
50
1.51
46587--46669
40
2.1
40
90
0
130
37
13
12
37
1.82
46896--46957
2
31.0
2
100
0
124
50
0
0
50
1.00
50992--51037
20
2.3
21
78
17
53
13
8
8
69
1.36
56319--56423
54
1.9
54
92
0
174
25
29
11
33
1.91
63063--63087
12
2.1
12
100
0
50
16
0
0
84
0.63
63144--63195
18
2.7
19
73
5
52
55
0
1
42
1.10
63212--63244
15
2.1
16
88
5
50
72
0
3
24
0.98
64121--64160
17
2.4
17
91
0
62
15
27
35
22
1.94

Tables:   1

The End!