Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003834.1 Hibiscus syriacus cultivar Beakdansim tig00008220_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70912

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4381--4524
72
2.0
72
95
0
261
21
22
22
33
1.97
5208--5243
2
18.0
2
94
0
63
52
0
0
47
1.00
6999--7037
4
9.5
4
86
13
53
71
0
2
25
0.98
7967--8027
23
2.7
23
89
0
95
26
27
26
19
1.99
8043--8261
103
2.1
104
93
0
377
36
22
13
26
1.91
11492--11529
19
2.0
19
89
0
58
63
7
0
28
1.23
14810--14875
31
2.1
31
94
0
114
30
7
10
51
1.64
15031--15062
2
16.0
2
100
0
64
50
0
0
50
1.00
15064--15136
29
2.6
27
74
21
69
46
2
0
50
1.15
15068--15210
32
4.8
30
74
15
111
44
1
0
53
1.09
16721--16768
2
24.5
2
95
4
89
47
0
0
52
1.00
16807--16857
24
2.2
23
86
10
68
19
3
5
70
1.24
16819--16864
24
1.9
24
86
0
65
21
4
6
67
1.32
28095--28761
105
6.3
105
95
0
1163
34
25
17
22
1.96
30490--30518
2
14.5
2
100
0
58
48
0
0
51
1.00
30556--30606
24
2.2
23
86
10
68
19
3
5
70
1.24
30568--30613
24
1.9
24
86
0
65
21
4
6
67
1.32
40368--40408
20
2.1
20
86
13
59
46
4
7
41
1.53
43087--43130
3
16.0
3
82
17
51
29
0
2
68
1.02
43084--43130
16
3.0
16
81
3
60
29
0
2
68
1.02
43077--43120
23
2.0
23
91
8
74
22
0
4
72
1.02
43572--43615
23
2.0
22
86
4
61
45
18
31
4
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44423--44462
12
3.5
11
86
10
53
32
2
0
65
1.06
44445--44535
3
32.3
3
72
16
54
25
3
2
69
1.15
44443--44475
17
2.0
17
88
5
50
30
0
0
69
0.88
44460--44513
22
2.5
22
100
0
108
24
3
3
68
1.22
48430--48526
18
5.0
18
71
14
61
30
8
4
56
1.47
50055--50228
75
2.3
76
78
3
181
30
17
21
30
1.96
51554--51632
23
3.5
22
89
5
122
32
10
13
43
1.78
52150--52475
165
2.0
166
88
3
485
35
14
12
37
1.84
52667--52707
17
2.4
17
100
0
82
51
4
24
19
1.66
52684--53055
113
3.3
112
90
1
579
36
14
20
28
1.92
52684--53055
111
3.3
111
91
1
575
36
14
20
28
1.92
53370--53431
13
5.2
12
77
15
58
25
1
1
70
1.05
53379--53432
3
19.3
3
78
21
55
29
0
1
68
1.00
53369--53417
19
2.7
18
84
6
64
22
2
2
73
1.04
53379--53432
16
3.4
16
82
2
65
29
0
1
68
1.00
55674--55715
20
2.2
19
86
4
57
33
0
2
64
1.07
56598--56641
22
2.0
22
90
0
70
52
6
11
29
1.63
60835--60870
19
1.9
18
88
5
54
52
5
0
41
1.24
60832--60894
27
2.3
28
83
5
76
47
6
1
44
1.38
61759--61784
2
13.0
2
100
0
52
50
0
0
50
1.00
63536--63621
43
2.0
43
97
0
163
34
31
13
19
1.91
64670--64697
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!