genome.fa.s3835.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003835.1 Hibiscus syriacus cultivar Beakdansim tig00008221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124939

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
803--958	65	2.4	65	89	3	226	28	18	21	30	1.97
803--1002	65	3.1	63	82	9	199	28	18	23	31	1.97
1618--1642	2	12.5	2	100	0	50	52	0	0	48	1.00
1887--1945	29	2.0	31	90	6	95	35	5	16	42	1.71
2010--2075	19	3.5	19	93	0	105	40	10	12	36	1.77
2181--2222	21	2.0	21	100	0	84	23	19	28	28	1.98
11793--11945	20	7.7	20	92	0	252	39	18	18	22	1.92
12143--12208	22	3.0	22	88	4	98	25	39	13	21	1.90
12544--12613	20	3.5	20	84	1	97	11	17	22	48	1.79
12577--12620	20	2.2	20	91	0	70	11	13	20	54	1.69
14504--14595	20	4.6	20	91	0	148	16	18	23	41	1.90
14504--14595	40	2.3	40	96	0	166	16	18	23	41	1.90
15072--15183	42	2.7	42	80	2	109	21	38	17	22	1.93
15076--15180	21	5.0	21	74	3	95	20	37	19	22	1.95
16568--16603	14	2.6	14	90	0	54	30	0	22	47	1.52
16709--16804	33	2.8	33	90	3	138	42	19	23	13	1.87
16742--16809	20	3.8	19	72	21	74	47	19	22	11	1.81
16815--16881	20	3.7	19	73	20	72	11	22	19	46	1.82
16841--16894	14	3.5	14	73	22	54	11	24	20	44	1.83
16819--16914	33	2.8	33	92	3	147	12	22	20	43	1.86
16886--16974	20	4.4	20	88	2	135	16	20	25	37	1.93
16886--16974	40	2.2	40	94	4	153	16	20	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18124--18210	20	4.3	20	94	0	138	24	19	26	29	1.98
18197--18289	20	4.7	20	93	0	150	21	19	19	39	1.92
18139--18270	40	3.3	40	81	6	108	21	19	23	35	1.96
18184--18330	60	2.4	61	74	9	156	25	18	22	34	1.96
24513--24568	27	2.1	28	80	9	64	44	1	8	44	1.45
26854--27070	54	4.0	54	81	2	256	22	23	22	31	1.98
37133--37172	17	2.3	18	83	12	57	55	17	2	25	1.55
37180--37256	22	3.5	22	89	3	118	38	25	9	25	1.85
38894--38983	14	6.6	14	72	8	60	16	0	34	48	1.47
38890--38983	34	2.7	34	78	4	109	18	0	35	46	1.49
39614--39718	54	1.9	54	84	7	142	31	15	6	46	1.71
41284--41321	2	19.0	2	100	0	76	50	0	0	50	1.00
42977--43084	36	3.0	35	87	5	153	44	11	32	12	1.77
48606--48646	21	2.0	21	90	0	64	43	17	26	12	1.84
55529--55578	25	2.0	26	96	4	93	20	12	38	30	1.88
56629--56659	15	2.1	15	93	0	53	54	0	0	45	0.99
61407--61477	3	24.0	3	88	8	110	33	0	0	66	0.92
70972--71016	21	2.1	21	87	0	63	31	28	24	15	1.96
72685--72747	13	5.5	13	68	27	61	20	26	26	25	1.99
72673--72760	22	4.0	22	98	0	158	20	27	27	25	1.99
75860--75904	21	2.1	21	87	0	63	31	28	24	15	1.96
77577--77639	13	5.5	13	68	27	61	20	26	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77565--77652	22	4.0	22	98	0	158	20	27	27	25	1.99
81593--81636	13	3.3	13	93	3	70	81	0	13	4	0.83
81989--82037	19	2.8	17	81	9	55	36	10	6	46	1.63
82331--82667	114	3.0	114	94	0	575	33	15	20	30	1.93
83435--83600	69	2.3	71	84	9	214	34	15	17	32	1.91
83369--83712	182	1.9	180	89	1	526	36	14	19	29	1.91
83509--84003	123	4.3	115	81	10	502	38	12	18	30	1.87
83787--84028	123	2.0	123	88	4	364	41	13	17	27	1.87
84219--84279	3	20.0	3	84	15	81	32	0	0	67	0.91
98653--98708	21	2.7	21	81	8	69	23	25	17	33	1.96
99585--99638	24	2.2	24	93	0	90	20	18	20	40	1.91
102148--102202	20	2.8	19	83	2	65	40	21	20	18	1.92
102175--102301	33	3.8	33	93	0	218	45	18	23	12	1.83
102155--102305	19	8.7	18	68	22	92	45	19	23	12	1.84
102311--102390	33	2.4	33	87	0	115	10	18	22	48	1.77
102497--102533	14	2.6	14	91	0	65	45	21	0	32	1.52
105768--105830	20	3.2	20	77	8	74	46	15	23	14	1.83
105767--105858	20	4.9	20	68	17	63	46	19	21	11	1.82
105888--105966	20	3.9	21	85	5	85	11	18	16	53	1.73
106520--106565	20	2.2	20	80	3	56	26	19	23	30	1.98
108186--108251	31	2.1	31	88	5	98	36	12	28	22	1.90
110285--110351	31	2.2	31	94	0	125	20	31	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110934--110967	16	2.1	16	88	0	50	5	8	2	82	0.93
111006--111042	18	2.0	19	94	5	67	37	10	2	48	1.52
116276--116418	72	2.0	71	94	1	250	21	22	23	32	1.98
117084--117115	2	16.0	2	93	0	55	53	0	0	46	1.00
119811--119871	23	2.7	23	89	0	95	26	27	26	19	1.99
119887--120103	103	2.1	102	94	0	380	37	22	13	26	1.91
120972--121016	21	2.1	21	87	0	63	15	24	28	31	1.96
123633--123670	19	2.0	19	89	0	58	63	7	0	28	1.23

Tables:   1

The End!