Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003836.1 Hibiscus syriacus cultivar Beakdansim tig00008222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 532632
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 3
Found at i:456659 original size:24 final size:26
Alignment explanation
Indices: 456632--456688 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 26
456622 CTAAATAATT
* *
456632 TTTAATATAA-TGTT-TTTAATATAA
1 TTTAATATAATTATTATTTAAAATAA
456656 TTT-ATA-AATTATTATTTAAAATAA
1 TTTAATATAATTATTATTTAAAATAA
456680 TTTAA-ATAA
1 TTTAATATAA
456689 AAATATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
22 2 0.07
23 6 0.22
24 16 0.59
25 3 0.11
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (26 bp):
TTTAATATAATTATTATTTAAAATAA
Found at i:456736 original size:2 final size:2
Alignment explanation
Indices: 456729--456759 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
456719 TTGCATTAAC
456729 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
456760 TAAATATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:459377 original size:18 final size:20
Alignment explanation
Indices: 459334--459382 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
459324 AAATGCTTTT
*
459334 GTATCGATACTCCTATAGGAA
1 GTATCGATACTCCCATA-GAA
459355 GTATCGATACTCCCAT-G-A
1 GTATCGATACTCCCATAGAA
459373 GTATCGATAC
1 GTATCGATAC
459383 CAAATTTGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 11 0.41
19 1 0.04
21 15 0.56
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (20 bp):
GTATCGATACTCCCATAGAA
Found at i:471763 original size:34 final size:34
Alignment explanation
Indices: 471725--471825 Score: 99
Period size: 34 Copynumber: 3.2 Consensus size: 34
471715 ATATTCATAT
*
471725 TATATTCGTATAATAATAAAATGTTTTAAGTTAA
1 TATATTCGTATAATAATAAAATATTTTAAGTTAA
* * * *
471759 TATATT--T-TAA-AAT-ATATATATT--CTTAT
1 TATATTCGTATAATAATAAAATATTTTAAGTTAA
*
471786 TATATTCGTATCATAATAAAATATTTTAAGTTAA
1 TATATTCGTATAATAATAAAATATTTTAAGTTAA
471820 TATATT
1 TATATT
471826 TTAAAAAATA
Statistics
Matches: 50, Mismatches: 10, Indels: 14
0.68 0.14 0.19
Matches are distributed among these distances:
27 9 0.18
29 7 0.14
30 5 0.10
31 6 0.12
32 8 0.16
34 15 0.30
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.49
Consensus pattern (34 bp):
TATATTCGTATAATAATAAAATATTTTAAGTTAA
Found at i:471787 original size:61 final size:61
Alignment explanation
Indices: 471709--471840 Score: 228
Period size: 61 Copynumber: 2.2 Consensus size: 61
471699 TAATATATAT
*
471709 ATATATATATTCATATTATATTCGTATAATAATAAAATGTTTTAAGTTAATATATTTTAAA
1 ATATATATATTCATATTATATTCGTATAATAATAAAATATTTTAAGTTAATATATTTTAAA
* *
471770 ATATATATATTCTTATTATATTCGTATCATAATAAAATATTTTAAGTTAATATATTTTAAA
1 ATATATATATTCATATTATATTCGTATAATAATAAAATATTTTAAGTTAATATATTTTAAA
*
471831 AAATATATAT
1 ATATATATAT
471841 ATTCGTAAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 67 1.00
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (61 bp):
ATATATATATTCATATTATATTCGTATAATAATAAAATATTTTAAGTTAATATATTTTAAA
Found at i:479610 original size:43 final size:43
Alignment explanation
Indices: 479498--479806 Score: 220
Period size: 43 Copynumber: 7.2 Consensus size: 43
479488 TTTGAACCAA
* * *
479498 AAACGCCGCCATAGGTCAAGATCTATAGC-G-GTTTTTTAGAAC
1 AAACGCCGCAAAAGGTCAAGATATATAGCGGCGTTTTTT-GAAC
* * *
479540 AAACGCCGCAAAATGTCGAGATATATAGCGACGTTTTTTGAAC
1 AAACGCCGCAAAAGGTCAAGATATATAGCGGCGTTTTTTGAAC
* * * * * * *
479583 AAGCGTCGCCATAGGTCAAGATCTATAGCGGCATTTTTGGAAC
1 AAACGCCGCAAAAGGTCAAGATATATAGCGGCGTTTTTTGAAC
* * * *
479626 AATCGCCACAAAATGTCGAGATATATAGCGGCGTTTTTTGAAC
1 AAACGCCGCAAAAGGTCAAGATATATAGCGGCGTTTTTTGAAC
* * * * *
479669 AAATGCCACAAAAGGT-TAGATCTATAGTGGCGTTTGTATCT-AA-
1 AAACGCCGCAAAAGGTCAAGATATATAGCGGCGTTT-T-T-TGAAC
** * * *
479712 AAACGCCATAAAAGGTC-AGATCTATAGCGAC-TTTTTGGGATAC
1 AAACGCCGCAAAAGGTCAAGATATATAGCGGCGTTTTT-TGA-AC
* * **
479755 AAACGCCGCAAAAGGT-AAGATCTATAGCGACGTTTTGGGATAC
1 AAACGCCGCAAAAGGTCAAGATATATAGCGGCGTTTTTTGA-AC
479798 AAACGCCGC
1 AAACGCCGC
479807 TAATTACCTC
Statistics
Matches: 215, Mismatches: 41, Indels: 21
0.78 0.15 0.08
Matches are distributed among these distances:
40 1 0.00
41 2 0.01
42 44 0.20
43 153 0.71
44 14 0.07
45 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (43 bp):
AAACGCCGCAAAAGGTCAAGATATATAGCGGCGTTTTTTGAAC
Found at i:479802 original size:86 final size:86
Alignment explanation
Indices: 479498--479804 Score: 311
Period size: 86 Copynumber: 3.6 Consensus size: 86
479488 TTTGAACCAA
* * * * *
479498 AAACGCCGCCATAGGTCAAGATCTATAGCGG-TTTTTTAGAACAAACGCCGCAAAATGTCGAGAT
1 AAACGCCGCAAAAGGTCAAGATCTATAGCGGCGTTTTTGGAACAAACGCCACAAAATGTCGAGAT
479562 ATATAGCGACGTTTTTTGAAC
66 ATATAGCGACGTTTTTTGAAC
* * * * * *
479583 AAGCGTCGCCATAGGTCAAGATCTATAGCGGCATTTTTGGAACAATCGCCACAAAATGTCGAGAT
1 AAACGCCGCAAAAGGTCAAGATCTATAGCGGCGTTTTTGGAACAAACGCCACAAAATGTCGAGAT
*
479648 ATATAGCGGCGTTTTTTGAAC
66 ATATAGCGACGTTTTTTGAAC
* * * * ** * *
479669 AAATGCCACAAAAGGT-TAGATCTATAGTGGCGTTTGTATCTAA-AAACGCCATAAAAGGTC-AG
1 AAACGCCGCAAAAGGTCAAGATCTATAGCGGCGTTT-T-TGGAACAAACGCCACAAAATGTCGAG
* *
479731 ATCTATAGCGAC-TTTTTGGGATAC
64 ATATATAGCGACGTTTTT-TGA-AC
* *
479755 AAACGCCGCAAAAGGT-AAGATCTATAGCGACGTTTTGGGATACAAACGCC
1 AAACGCCGCAAAAGGTCAAGATCTATAGCGGCGTTTTTGGA-ACAAACGCC
479805 GCTAATTACC
Statistics
Matches: 183, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
84 6 0.03
85 61 0.33
86 113 0.62
87 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (86 bp):
AAACGCCGCAAAAGGTCAAGATCTATAGCGGCGTTTTTGGAACAAACGCCACAAAATGTCGAGAT
ATATAGCGACGTTTTTTGAAC
Found at i:482885 original size:41 final size:41
Alignment explanation
Indices: 482819--483183 Score: 391
Period size: 41 Copynumber: 8.9 Consensus size: 41
482809 GAAAACGGCA
* * * *
482819 GTGTTTGTAT-AAAAACACGACTAAAGTACAATTCTTTAGCG
1 GTGTTTGT-TGAAAAACGCCACTAAAGTACGAGTCTTTAGCG
* * *
482860 GTATTTGTTGAAAAACGCCATTAAAGTACGAGTTTTTAGCG
1 GTGTTTGTTGAAAAACGCCACTAAAGTACGAGTCTTTAGCG
* *
482901 GCGTTTGTAT-AAAAATGCCACTAAAGTACGAGTCTTTAGCG
1 GTGTTTGT-TGAAAAACGCCACTAAAGTACGAGTCTTTAGCG
* *
482942 GTGTTTGTTGAAAAAACACCACTAAAGTATGAGTCTTTAGCG
1 GTGTTTGTTG-AAAAACGCCACTAAAGTACGAGTCTTTAGCG
* * * *
482984 GCGTTTATTTAGAAACGCCACTAAAGTACGAGTCTTTAGCG
1 GTGTTTGTTGAAAAACGCCACTAAAGTACGAGTCTTTAGCG
*
483025 GTGTTTGTTGAAAAAACACCACTAAAGTACGAGTCTTTAGC-
1 GTGTTTGTTG-AAAAACGCCACTAAAGTACGAGTCTTTAGCG
* * *
483066 GTCGTTTATTTAAAAACGCCACTAAAGTACGAGTCTTTTGC-
1 GT-GTTTGTTGAAAAACGCCACTAAAGTACGAGTCTTTAGCG
* * * **
483107 ATCGTTTGTAT-AACAATGCCACTAAAGTATTAGTCTTTAGCG
1 GT-GTTTGT-TGAAAAACGCCACTAAAGTACGAGTCTTTAGCG
*
483149 GCGTTTGTAT-AAAAACGCCACTAAAGTACGAGTCT
1 GTGTTTGT-TGAAAAACGCCACTAAAGTACGAGTCT
483184 GGATGAACCT
Statistics
Matches: 272, Mismatches: 44, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
40 2 0.01
41 199 0.73
42 71 0.26
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (41 bp):
GTGTTTGTTGAAAAACGCCACTAAAGTACGAGTCTTTAGCG
Found at i:482957 original size:124 final size:122
Alignment explanation
Indices: 482829--483183 Score: 419
Period size: 124 Copynumber: 2.9 Consensus size: 122
482819 GTGTTTGTAT
* * * * * *
482829 AAAAACACGACTAAAGTACAATTCTTTAGCGGTATTTGTTGAAAAACGCCATTAAAGTACGAGTT
1 AAAAACACCACTAAAGTACGAGTCTTTAGCGGTGTTTGTT-AAAAACGCCACTAAAGTACGAGTC
* *
482894 TTTAGCGGCGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGGT-GTTTGTTGA
65 TTTAGCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTAGC-GTCGTTTATT-A
* * * *
482953 AAAAACACCACTAAAGTATGAGTCTTTAGCGGCGTTTATTTAGAAACGCCACTAAAGTACGAGTC
1 AAAAACACCACTAAAGTACGAGTCTTTAGCGGTGTTT-GTTAAAAACGCCACTAAAGTACGAGTC
* * *
483018 TTTAGCGGTGTTTGT-TGAAAAAACACCACTAAAGTACGAGTCTTTAGCGTCGTTTATTT
65 TTTAGCGGCGTTTGTAT--AAAAACGCCACTAAAGTACGAGTCTTTAGCGTCGTTTATTA
* * * * * **
483077 AAAAACGCCACTAAAGTACGAGTCTTTTGC-ATCGTTTGTATAACAATGCCACTAAAGTATTAGT
1 AAAAACACCACTAAAGTACGAGTCTTTAGCGGT-GTTTGT-TAAAAACGCCACTAAAGTACGAGT
483141 CTTTAGCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCT
64 CTTTAGCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCT
483184 GGATGAACCT
Statistics
Matches: 196, Mismatches: 28, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
123 26 0.13
124 133 0.68
125 37 0.19
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Consensus pattern (122 bp):
AAAAACACCACTAAAGTACGAGTCTTTAGCGGTGTTTGTTAAAAACGCCACTAAAGTACGAGTCT
TTAGCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTAGCGTCGTTTATTA
Found at i:483006 original size:83 final size:83
Alignment explanation
Indices: 482821--483183 Score: 464
Period size: 83 Copynumber: 4.4 Consensus size: 83
482811 AAACGGCAGT
* * * * * * * *
482821 GTTTGTATAAAAACACGACTAAAGTACAATTCTTTAGCGGTATTTGTTG-AAAAACGCCATTAAA
1 GTTTATATAAAAACGCCACTAAAGTACGAGTCTTTAGCGGTGTTTGTTGAAAAAACACCACTAAA
*
482885 GTACGAGTTTTTAGCGGC
66 GTACGAGTCTTTAGCGGC
* *
482903 GTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGGTGTTTGTTGAAAAAACACCACTAAA
1 GTTTATATAAAAACGCCACTAAAGTACGAGTCTTTAGCGGTGTTTGTTGAAAAAACACCACTAAA
*
482968 GTATGAGTCTTTAGCGGC
66 GTACGAGTCTTTAGCGGC
* *
482986 GTTTATTTAGAAACGCCACTAAAGTACGAGTCTTTAGCGGTGTTTGTTGAAAAAACACCACTAAA
1 GTTTATATAAAAACGCCACTAAAGTACGAGTCTTTAGCGGTGTTTGTTGAAAAAACACCACTAAA
*
483051 GTACGAGTCTTTAGCGTC
66 GTACGAGTCTTTAGCGGC
* * * * **
483069 GTTTATTTAAAAACGCCACTAAAGTACGAGTCTTTTGC-ATCGTTTG-T-ATAACAATGCCACTA
1 GTTTATATAAAAACGCCACTAAAGTACGAGTCTTTAGCGGT-GTTTGTTGA-AAAAACACCACTA
**
483131 AAGTATTAGTCTTTAGCGGC
64 AAGTACGAGTCTTTAGCGGC
*
483151 GTTTGTATAAAAACGCCACTAAAGTACGAGTCT
1 GTTTATATAAAAACGCCACTAAAGTACGAGTCT
483184 GGATGAACCT
Statistics
Matches: 251, Mismatches: 27, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
81 1 0.00
82 103 0.41
83 147 0.59
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (83 bp):
GTTTATATAAAAACGCCACTAAAGTACGAGTCTTTAGCGGTGTTTGTTGAAAAAACACCACTAAA
GTACGAGTCTTTAGCGGC
Found at i:487269 original size:18 final size:19
Alignment explanation
Indices: 487239--487274 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
487229 ACAGTTCGTG
487239 CTCCCCTTTCCCCCTTCCC
1 CTCCCCTTTCCCCCTTCCC
487258 CTCCCC-TTCCCCCTTCC
1 CTCCCCTTTCCCCCTTCC
487275 ATAGTCGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (19 bp):
CTCCCCTTTCCCCCTTCCC
Found at i:488579 original size:6 final size:6
Alignment explanation
Indices: 488568--488593 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
488558 GCACATCTAC
488568 AACCCT AACCCT AACCCT AACCCT AA
1 AACCCT AACCCT AACCCT AACCCT AA
488594 TGTTCCGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (6 bp):
AACCCT
Found at i:489481 original size:37 final size:37
Alignment explanation
Indices: 489428--489499 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
489418 TTTGGGATGA
* *
489428 TTTCCAATGTGTACAAGTTAGCCACCAACCAAAGAAT
1 TTTCCAATGTGCACAAGTTAACCACCAACCAAAGAAT
489465 TTTCCAATGTGCACAAGTTAACCACCAACCAAAGA
1 TTTCCAATGTGCACAAGTTAACCACCAACCAAAGA
489500 TATCAACTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.39, C:0.26, G:0.12, T:0.22
Consensus pattern (37 bp):
TTTCCAATGTGCACAAGTTAACCACCAACCAAAGAAT
Found at i:489562 original size:16 final size:16
Alignment explanation
Indices: 489502--489559 Score: 89
Period size: 16 Copynumber: 3.6 Consensus size: 16
489492 ACCAAAGATA
489502 TCAACTTTGCCAACTT
1 TCAACTTTGCCAACTT
*
489518 TCAAATTTGCCAACTT
1 TCAACTTTGCCAACTT
* *
489534 TCAATTTTGCTAACTT
1 TCAACTTTGCCAACTT
489550 TCAACTTTGC
1 TCAACTTTGC
489560 TAATTTTTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.26, C:0.26, G:0.07, T:0.41
Consensus pattern (16 bp):
TCAACTTTGCCAACTT
Found at i:494285 original size:16 final size:16
Alignment explanation
Indices: 494264--494337 Score: 94
Period size: 16 Copynumber: 4.6 Consensus size: 16
494254 ACCAAAGATA
494264 TCAACTTTGCCAACTT
1 TCAACTTTGCCAACTT
* *
494280 TCAACTTTACCAATTT
1 TCAACTTTGCCAACTT
*
494296 TCAAATTTGCCAACTT
1 TCAACTTTGCCAACTT
* **
494312 TCAATTTTGTTAACTT
1 TCAACTTTGCCAACTT
494328 TCAACTTTGC
1 TCAACTTTGC
494338 TAATTTTTCA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.27, C:0.24, G:0.05, T:0.43
Consensus pattern (16 bp):
TCAACTTTGCCAACTT
Found at i:504042 original size:23 final size:23
Alignment explanation
Indices: 504012--504059 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
504002 GTAGGTTACA
504012 TGGAACAGTGACGAAAAGGAGAG
1 TGGAACAGTGACGAAAAGGAGAG
504035 TGGAACAGTGACGAAAAGGAGAG
1 TGGAACAGTGACGAAAAGGAGAG
504058 TG
1 TG
504060 CGAGGGTGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.08, G:0.40, T:0.10
Consensus pattern (23 bp):
TGGAACAGTGACGAAAAGGAGAG
Found at i:511770 original size:24 final size:24
Alignment explanation
Indices: 511743--511850 Score: 89
Period size: 23 Copynumber: 4.6 Consensus size: 24
511733 CAGTCAAAAC
511743 TGCCACGTAGAATTTGTACCGAAG
1 TGCCACGTAGAATTTGTACCGAAG
****
511767 TGCCACGTAGAATACACACCGAAG
1 TGCCACGTAGAATTTGTACCGAAG
* *
511791 TGCCACATAG-ATTTGTCCCGAAG
1 TGCCACGTAGAATTTGTACCGAAG
* *
511814 -GACCGCGTAGAA-TTGTCCCGAA-
1 TG-CCACGTAGAATTTGTACCGAAG
*
511836 TGACCACATAGAATT
1 TG-CCACGTAGAATT
511851 GTCCCCAAGG
Statistics
Matches: 66, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
22 1 0.02
23 34 0.52
24 31 0.47
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.21
Consensus pattern (24 bp):
TGCCACGTAGAATTTGTACCGAAG
Found at i:511824 original size:23 final size:23
Alignment explanation
Indices: 511785--511877 Score: 116
Period size: 23 Copynumber: 4.0 Consensus size: 23
511775 AGAATACACA
*
511785 CCGAAGTG-CCACATAGATTTGTC
1 CCGAAG-GACCACATAGAATTGTC
* *
511808 CCGAAGGACCGCGTAGAATTGTC
1 CCGAAGGACCACATAGAATTGTC
*
511831 CCGAATGACCACATAGAATTGTC
1 CCGAAGGACCACATAGAATTGTC
* *
511854 CCCAAGGACCATATAGAATTGTC
1 CCGAAGGACCACATAGAATTGTC
511877 C
1 C
511878 TAAATGACCG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
22 1 0.02
23 59 0.98
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (23 bp):
CCGAAGGACCACATAGAATTGTC
Found at i:511853 original size:46 final size:46
Alignment explanation
Indices: 511785--511894 Score: 132
Period size: 46 Copynumber: 2.4 Consensus size: 46
511775 AGAATACACA
* * * *
511785 CCGAAGTG-CCACATAGATTTGTCCCGAAGGACCGCGTAGAATTGTC
1 CCGAA-TGACCACATAGAATTGTCCCCAAGGACCACATAGAATTGTC
*
511831 CCGAATGACCACATAGAATTGTCCCCAAGGACCATATAGAATTGTC
1 CCGAATGACCACATAGAATTGTCCCCAAGGACCACATAGAATTGTC
** *
511877 CTAAATGACCGCATAGAA
1 CCGAATGACCACATAGAA
511895 CCCTCAACTC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 2 0.04
46 53 0.96
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (46 bp):
CCGAATGACCACATAGAATTGTCCCCAAGGACCACATAGAATTGTC
Found at i:511886 original size:23 final size:23
Alignment explanation
Indices: 511793--511894 Score: 105
Period size: 23 Copynumber: 4.4 Consensus size: 23
511783 CACCGAAGTG
* * *
511793 CCACATAGATTTGTCCCGAAGGA
1 CCACATAGAATTGTCCCAAATGA
* * *
511816 CCGCGTAGAATTGTCCCGAATGA
1 CCACATAGAATTGTCCCAAATGA
* *
511839 CCACATAGAATTGTCCCCAAGGA
1 CCACATAGAATTGTCCCAAATGA
* *
511862 CCATATAGAATTGTCCTAAATGA
1 CCACATAGAATTGTCCCAAATGA
*
511885 CCGCATAGAA
1 CCACATAGAA
511895 CCCTCAACTC
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 65 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (23 bp):
CCACATAGAATTGTCCCAAATGA
Found at i:513301 original size:18 final size:18
Alignment explanation
Indices: 513255--513310 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
513245 GTATTTATAC
513255 CCCCCAGGGGTATCCATA
1 CCCCCAGGGGTATCCATA
* *
513273 --CCCA-TGGTATCGATA
1 CCCCCAGGGGTATCCATA
513288 CCCCCAGGGGTATCCATA
1 CCCCCAGGGGTATCCATA
513306 CCCCC
1 CCCCC
513311 TGGCTGCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 9 0.29
16 4 0.13
17 4 0.13
18 14 0.45
ACGTcount: A:0.21, C:0.41, G:0.20, T:0.18
Consensus pattern (18 bp):
CCCCCAGGGGTATCCATA
Found at i:513380 original size:21 final size:21
Alignment explanation
Indices: 513341--513382 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
513331 ATTTGAATTT
*
513341 TATGAAGGAGTATCAATACCC
1 TATGAAGGAGTACCAATACCC
* *
513362 TATGAAGGGGTACCGATACCC
1 TATGAAGGAGTACCAATACCC
513383 CCTATCGTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (21 bp):
TATGAAGGAGTACCAATACCC
Found at i:516715 original size:22 final size:20
Alignment explanation
Indices: 516675--516719 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
516665 AAAATGTTAT
516675 AGGGTACCGATACCCCCTGCA
1 AGGGTACCGATACCCCCTG-A
516696 AGGGTATCC-ATACCCCCCTGA
1 AGGGTA-CCGATA-CCCCCTGA
516717 AGG
1 AGG
516720 CTCAAATTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (20 bp):
AGGGTACCGATACCCCCTGA
Found at i:516766 original size:18 final size:18
Alignment explanation
Indices: 516743--516894 Score: 133
Period size: 18 Copynumber: 8.8 Consensus size: 18
516733 TTGCTCAGAT
* *
516743 GGTATCTATACCCCTAGG
1 GGTATCCATACCCCCAGG
*
516761 GGTATCTATACCCCCAGG
1 GGTATCCATACCCCCAGG
*
516779 GGTATCCATA--CCCA-T
1 GGTATCCATACCCCCAGG
*
516794 GGTATCGATACCCCCAGG
1 GGTATCCATACCCCCAGG
*
516812 GGTATCCATA--CCCA-T
1 GGTATCCATACCCCCAGG
* *
516827 GGTATCGATACCCCCCGGG
1 GGTATCCATA-CCCCCAGG
*
516846 GGTATCCATA--CCCA-T
1 GGTATCCATACCCCCAGG
*
516861 GGTATCGATACCCCCCAGG
1 GGTATCCATA-CCCCCAGG
516880 GGTATCCATACCCCC
1 GGTATCCATACCCCC
516895 TGGCTGCAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
15 27 0.25
16 11 0.10
17 4 0.04
18 47 0.44
19 18 0.17
ACGTcount: A:0.22, C:0.35, G:0.21, T:0.22
Consensus pattern (18 bp):
GGTATCCATACCCCCAGG
Found at i:516799 original size:15 final size:15
Alignment explanation
Indices: 516779--516873 Score: 73
Period size: 15 Copynumber: 5.9 Consensus size: 15
516769 TACCCCCAGG
516779 GGTATCCATACCCAT
1 GGTATCCATACCCAT
* *
516794 GGTATCGATACCCCCAGG
1 GGTATCCATA--CCCA-T
516812 GGTATCCATACCCAT
1 GGTATCCATACCCAT
* **
516827 GGTATCGATACCCCCCGGG
1 GGTATCCATA---CCC-AT
516846 GGTATCCATACCCAT
1 GGTATCCATACCCAT
*
516861 GGTATCGATACCC
1 GGTATCCATACCC
516874 CCCAGGGGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
15 30 0.48
16 7 0.11
17 4 0.06
18 12 0.19
19 9 0.15
ACGTcount: A:0.23, C:0.34, G:0.21, T:0.22
Consensus pattern (15 bp):
GGTATCCATACCCAT
Found at i:516805 original size:33 final size:34
Alignment explanation
Indices: 516761--516892 Score: 232
Period size: 34 Copynumber: 3.9 Consensus size: 34
516751 TACCCCTAGG
*
516761 GGTATCTATA-CCCCCAGGGGTATCCATACCCAT
1 GGTATCGATACCCCCCAGGGGTATCCATACCCAT
516794 GGTATCGATA-CCCCCAGGGGTATCCATACCCAT
1 GGTATCGATACCCCCCAGGGGTATCCATACCCAT
*
516827 GGTATCGATACCCCCCGGGGGTATCCATACCCAT
1 GGTATCGATACCCCCCAGGGGTATCCATACCCAT
516861 GGTATCGATACCCCCCAGGGGTATCCATACCC
1 GGTATCGATACCCCCCAGGGGTATCCATACCC
516893 CCTGGCTGCA
Statistics
Matches: 95, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
33 42 0.44
34 53 0.56
ACGTcount: A:0.23, C:0.35, G:0.21, T:0.21
Consensus pattern (34 bp):
GGTATCGATACCCCCCAGGGGTATCCATACCCAT
Found at i:516853 original size:67 final size:67
Alignment explanation
Indices: 516761--516892 Score: 230
Period size: 67 Copynumber: 2.0 Consensus size: 67
516751 TACCCCTAGG
*
516761 GGTATCTATACCCCCAGGGGTATCCATACCCATGGTATCGATA-CCCCCAGGGGTATCCATACCC
1 GGTATCGATACCCCCAGGGGTATCCATACCCATGGTATCGATACCCCCCAGGGGTATCCATACCC
516825 AT
66 AT
*
516827 GGTATCGATACCCCCCGGGGGTATCCATACCCATGGTATCGATACCCCCCAGGGGTATCCATACC
1 GGTATCGATA-CCCCCAGGGGTATCCATACCCATGGTATCGATACCCCCCAGGGGTATCCATACC
516892 C
65 C
516893 CCTGGCTGCA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
66 9 0.15
67 32 0.52
68 21 0.34
ACGTcount: A:0.23, C:0.35, G:0.21, T:0.21
Consensus pattern (67 bp):
GGTATCGATACCCCCAGGGGTATCCATACCCATGGTATCGATACCCCCCAGGGGTATCCATACCC
AT
Found at i:518411 original size:18 final size:18
Alignment explanation
Indices: 518388--518430 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
518378 CTTTAGATTA
*
518388 TTTATTTAATTATTTTCT
1 TTTATTTAATTATTATCT
*
518406 TTTATTTAATTCTTATCT
1 TTTATTTAATTATTATCT
518424 TTTATTT
1 TTTATTT
518431 TAAGAACCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTAATTATTATCT
Found at i:518507 original size:30 final size:30
Alignment explanation
Indices: 518471--518534 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
518461 TCTTTACTAC
* *
518471 TATTA-TTTATTATTTTTCTCTTTTATTTAT
1 TATTATTTTATT-TTGTTTTCTTTTATTTAT
* *
518501 TATTATTTTATTTTGTTTTGTTTTATTTTT
1 TATTATTTTATTTTGTTTTCTTTTATTTAT
518531 TATT
1 TATT
518535 TTCCCACTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 23 0.79
31 6 0.21
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (30 bp):
TATTATTTTATTTTGTTTTCTTTTATTTAT
Found at i:518514 original size:20 final size:20
Alignment explanation
Indices: 518473--518514 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
518463 TTTACTACTA
*
518473 TTATTTATTATTTTTCTCTT
1 TTATTTATTATTTTTCTATT
518493 TTATTTATTATTATTT-TATT
1 TTATTTATTATT-TTTCTATT
518513 TT
1 TT
518515 GTTTTGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (20 bp):
TTATTTATTATTTTTCTATT
Found at i:518524 original size:15 final size:15
Alignment explanation
Indices: 518491--518598 Score: 76
Period size: 15 Copynumber: 6.9 Consensus size: 15
518481 TATTTTTCTC
*
518491 TTTTA-TTTATTATTA
1 TTTTATTTTATT-TTG
*
518506 TTTTATTTTGTTTTG
1 TTTTATTTTATTTTG
*
518521 TTTTATTTTTTATTTTCCC
1 TTTTA--TTTTATTTT--G
** *
518540 ACTTA-TTTATTTTA
1 TTTTATTTTATTTTG
518554 TTTTATTTTATTTTG
1 TTTTATTTTATTTTG
* *
518569 TTTTGTTTTGTTTTG
1 TTTTATTTTATTTTG
518584 TTTTATTTTTATTTT
1 TTTTA-TTTTATTTT
518599 CTCTTTTAAC
Statistics
Matches: 72, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
14 3 0.04
15 37 0.51
16 21 0.29
17 8 0.11
19 3 0.04
ACGTcount: A:0.14, C:0.04, G:0.06, T:0.77
Consensus pattern (15 bp):
TTTTATTTTATTTTG
Found at i:518551 original size:4 final size:5
Alignment explanation
Indices: 518491--518598 Score: 69
Period size: 5 Copynumber: 20.8 Consensus size: 5
518481 TATTTTTCTC
* *
518491 TTTTA -TTTA TTATTA TTTTA TTTTG TTTTG TTTTA TTTTTTA TTTTCCCA
1 TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA --TTTTA TTTT---A
* * * * *
518541 -CTTA -TTTA TTTTA TTTTA TTTTA TTTTG TTTTG TTTTG TTTTG TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
518589 TTTTTA TTTT
1 -TTTTA TTTT
518599 CTCTTTTAAC
Statistics
Matches: 88, Mismatches: 6, Indels: 18
0.79 0.05 0.16
Matches are distributed among these distances:
4 8 0.09
5 62 0.70
6 10 0.11
7 7 0.08
8 1 0.01
ACGTcount: A:0.14, C:0.04, G:0.06, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:518606 original size:53 final size:56
Alignment explanation
Indices: 518473--518606 Score: 143
Period size: 58 Copynumber: 2.4 Consensus size: 56
518463 TTTACTACTA
* *
518473 TTATTTATTATTTTTCTCTTTTATTTATTATTATTTTATTTTGTTTTGTTTTATTTT
1 TTATTT-TTACTTTTCTCTTTTATTTATTATTATTTTATTTTGTTTTGTTTTATGTT
* * *
518530 TTATTTTCCCACTTATT-TATTTTATTTTATT-TTATTTTGTTTTGTTTTG-TTT-TGTT
1 TTATTTT--TACTT-TTCTCTTTTA-TTTATTATTATTTTATTTTGTTTTGTTTTATGTT
518586 TTATTTTTA-TTTTCTCTTTTA
1 TTATTTTTACTTTTCTCTTTTA
518607 ACATTTCATT
Statistics
Matches: 65, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
52 2 0.03
53 8 0.12
54 1 0.02
56 11 0.17
57 9 0.14
58 26 0.40
59 8 0.12
ACGTcount: A:0.14, C:0.06, G:0.04, T:0.75
Consensus pattern (56 bp):
TTATTTTTACTTTTCTCTTTTATTTATTATTATTTTATTTTGTTTTGTTTTATGTT
Found at i:518648 original size:28 final size:28
Alignment explanation
Indices: 518617--518681 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
518607 ACATTTCATT
518617 ATATTTTATTATTTT-TTTCTGAAATTTA
1 ATATTTTATTATTTTATTT-TGAAATTTA
* * **
518645 ATATTTCATTCTTTTATTTTTTAATTTA
1 ATATTTTATTATTTTATTTTGAAATTTA
518673 AT-TTTTATT
1 ATATTTTATT
518682 TGATATTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 6 0.19
28 22 0.71
29 3 0.10
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (28 bp):
ATATTTTATTATTTTATTTTGAAATTTA
Found at i:523324 original size:204 final size:203
Alignment explanation
Indices: 522684--523393 Score: 698
Period size: 210 Copynumber: 3.4 Consensus size: 203
522674 GCTAAAAATT
* *
522684 CTGCTAAGACAGTGAAAGCTGATAGCGGTTCCGAGTCTAGTAGTGAGGAAGATTCATCCTCCGAT
1 CTGCTAAGACAGTGAAAGCTGATAGCAGTTCCGAGTCTAGTAGTGAGGAAGATTCATCCTCCGAC
* * * * * ** *
522749 GAAGTGAGTATTCTGCTGATGCTTATAAATTTAACATGATTGGACCTATTCTTTCGTACT-ATTA
66 GAAGTGAGTATTATGCTCATGGTTATATA-TTAGCATGATTGGAAAT-TTCTTTTGTA-TGATTA
* * * *
522813 TTGGCTAATTTTTTGTTTTATTCCAGGAAGCTCCTGCTCAAAATAAAAAAGCCGCAGTTGCTAAA
128 -T-G-TAAGTTTTTG-TTTATTCCAGGAAGCTCCTGCTCAGAATAAAAAA-CCGTAGTTGCCAAA
* *
522878 AATGCCTCTGTTCTTG
188 AATGACTCTGTTCTAG
* * * * **
522894 CTCCTAAGACTGTTAAACCTGATAAAAGTTCCGAGTCTAGTAGTGAGGAAGATTCATCCTCCGAC
1 CTGCTAAGACAGTGAAAGCTGATAGCAGTTCCGAGTCTAGTAGTGAGGAAGATTCATCCTCCGAC
* * * * *
522959 GAAGTGAGTATTATGCTCATGGTTGTACTACTAGCATGATTAGAAA-TACTCTTGTATGATTGTT
66 GAAGTGAGTATTATGCTCATGGTTATA-TATTAGCATGATTGGAAATTTCTTTTGTATGA---TT
* * * * * *
523023 AATGATCAAGTTTTTGTTTATTACAGGAACCTACTGCCCAGAATAAAAACCCTTTAGTTG-CAAA
127 -ATG-T-AAGTTTTTGTTTATTCCAGGAAGCTCCTGCTCAGAATAAAAAACC-GTAGTTGCCAAA
* *
523087 AAGTGTCTCTGTTCCAG
188 AA-TGACTCTGTTCTAG
* * * *
523104 CTGCTAAGACAGTGAAAGCTGATAGCAGTTCTGATTCTAGTAGTGAAGATGATTCATCCTCCGAC
1 CTGCTAAGACAGTGAAAGCTGATAGCAGTTCCGAGTCTAGTAGTGAGGAAGATTCATCCTCCGAC
* * *
523169 GAAGTGAGTATTATCCT-ATGGTTATAGTATTAGCATGGTGGGAAATTTTCTTTTGTATGATTAT
66 GAAGTGAGTATTATGCTCATGGTTATA-TATTAGCATGATTGGAAA-TTTCTTTTGTATGATTAT
523233 -TAAGTTTTTGTTTATTCCAGGAAGCTCCTGCTCAGAATAAAAAACCAGTAGTTGCCAAAAATGA
129 GTAAGTTTTTGTTTATTCCAGGAAGCTCCTGCTCAGAATAAAAAACC-GTAGTTGCCAAAAATGA
*
523297 CTCTACTT-TAG
193 CTCT-GTTCTAG
* * ** *
523308 CTGCTAAGAAAGTGAAAGCTGAT-G-ATGATTCTGAGTCTAGTAGTGAGGAAGGGTCATCCTCGG
1 CTGCTAAGACAGTGAAAGCTGATAGCA-G-TTCCGAGTCTAGTAGTGAGGAAGATTCATCCTCCG
* * *
523371 AAGAAGTGAGTACTATGCCCATG
64 ACGAAGTGAGTATTATGCTCATG
523394 CTCGTAACAT
Statistics
Matches: 409, Mismatches: 75, Indels: 37
0.79 0.14 0.07
Matches are distributed among these distances:
202 1 0.00
203 2 0.00
204 120 0.29
205 12 0.03
207 3 0.01
208 10 0.02
209 29 0.07
210 208 0.51
211 23 0.06
212 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (203 bp):
CTGCTAAGACAGTGAAAGCTGATAGCAGTTCCGAGTCTAGTAGTGAGGAAGATTCATCCTCCGAC
GAAGTGAGTATTATGCTCATGGTTATATATTAGCATGATTGGAAATTTCTTTTGTATGATTATGT
AAGTTTTTGTTTATTCCAGGAAGCTCCTGCTCAGAATAAAAAACCGTAGTTGCCAAAAATGACTC
TGTTCTAG
Found at i:527571 original size:39 final size:40
Alignment explanation
Indices: 527479--527574 Score: 103
Period size: 39 Copynumber: 2.5 Consensus size: 40
527469 CAGCGGAAGA
527479 GGTGGCA-GAGGTGGT-GATAGGAGTGGAGGAAGGGACGGT
1 GGTGGCATGA-GTGGTGGATAGGAGTGGAGGAAGGGACGGT
* * *
527518 GGCGG--TGGCCGTGGTGGAT-GGAGTGGGGGAAGGGACGGT
1 GGTGGCAT-G-AGTGGTGGATAGGAGTGGAGGAAGGGACGGT
527557 GGTGGCATGAGTGGTGGA
1 GGTGGCATGAGTGGTGGA
527575 AGAGATGGAG
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
39 41 0.89
40 4 0.09
41 1 0.02
ACGTcount: A:0.18, C:0.07, G:0.58, T:0.17
Consensus pattern (40 bp):
GGTGGCATGAGTGGTGGATAGGAGTGGAGGAAGGGACGGT
Found at i:527587 original size:27 final size:27
Alignment explanation
Indices: 527530--527588 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
527520 CGGTGGCCGT
* *
527530 GGTGGATGGAGTGGGGGAAGGGACGGT
1 GGTGGATGGAGTGGGGGAAGAGACGGA
* *
527557 GGTGGCAT-GAGTGGTGGAAGAGATGGA
1 GGTGG-ATGGAGTGGGGGAAGAGACGGA
527584 GGTGG
1 GGTGG
527589 GCGTGGTGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.20, C:0.03, G:0.59, T:0.17
Consensus pattern (27 bp):
GGTGGATGGAGTGGGGGAAGAGACGGA
Found at i:529938 original size:30 final size:30
Alignment explanation
Indices: 529884--529940 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
529874 AATAACAAAA
**
529884 AAATAGAAATTTAAATTATCAAAATAGCAC
1 AAATAGAAATTTAAAGAATCAAAATAGCAC
*
529914 AAATAGAAATTTAAAGAATTAAAATAG
1 AAATAGAAATTTAAAGAATCAAAATAG
529941 TATTAACATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.60, C:0.05, G:0.09, T:0.26
Consensus pattern (30 bp):
AAATAGAAATTTAAAGAATCAAAATAGCAC
Found at i:532140 original size:3 final size:3
Alignment explanation
Indices: 532132--532630 Score: 716
Period size: 3 Copynumber: 170.0 Consensus size: 3
532122 ATCCCTTTAC
532132 CTT CTT CTT CTT CTT CTT CTT C-T CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
532179 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT -TT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
532226 CTT CTT CTT CTT CTT CTT C-T CTT CTT CTT CTT CTT CTT C-T CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
532272 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTCT CTTT CTCT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT-T C-TT CT-T
532320 CTT C-T CTT CTT CTT CTT -TT CTT CTTT CTT CTT CTT CTT C-T CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT
*
532363 CTTT CTT C-T CTT CTT -TT -TT TTT CTT CTT CTT CTT CTT CTT -TT
1 C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
532405 CTT CTT CTT CTT CTTT CTT CTT CTT CTT CTT CTTT CTT CTT TTT CTT
1 CTT CTT CTT CTT C-TT CTT CTT CTT CTT CTT C-TT CTT CTT CTT CTT
532452 CTT CTT -TT CTT -TT CTT CTT CTT CTT CCTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT -CTT CTT CTT CTT CTT CTT
*
532496 CTT CTT CTT -TT C-T CTT CTT CTT TTT CTT CTT C-T CTT -TT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
532540 CTT CTTT CTT C-T ATT CTT CTT CTT CTTT CTT -TT CTT CTT CTT CTT
1 CTT C-TT CTT CTT CTT CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT
*
532585 CTT CTT ATT CTT CTT CTT CTT CTT CTT CTT -TT CTT CTT CTT -TT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
532631 TT
Statistics
Matches: 457, Mismatches: 9, Indels: 60
0.87 0.02 0.11
Matches are distributed among these distances:
2 41 0.09
3 387 0.85
4 28 0.06
5 1 0.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.68
Consensus pattern (3 bp):
CTT
Done.