Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003837.1 Hibiscus syriacus cultivar Beakdansim tig00008224_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83779

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2354--2468
39
3.1
38
80
9
112
34
13
0
50
1.48
3815--3844
13
2.3
13
94
0
51
30
13
0
56
1.37
4971--5014
17
2.5
18
92
3
72
29
38
9
22
1.85
28046--28086
17
2.3
18
87
4
57
48
7
0
43
1.30
31348--32953
570
2.8
570
92
1
2584
33
14
19
33
1.91
54582--54700
42
2.9
42
97
1
222
15
20
19
44
1.87
54889--54949
22
2.8
22
80
2
61
45
0
0
54
1.00
54889--54949
20
2.9
22
83
7
65
45
0
0
54
1.00
54900--54977
30
2.5
31
76
15
74
47
1
0
51
1.09
54961--55062
29
3.5
29
80
11
93
45
0
1
52
1.12
55229--55296
20
3.4
20
95
0
127
33
14
10
41
1.80
55281--55323
15
2.9
15
85
0
68
30
18
6
44
1.76
55445--55484
18
2.3
18
91
4
64
47
7
0
45
1.31
55774--55833
32
1.9
31
86
3
84
56
5
0
38
1.21
55780--55832
15
3.2
18
74
20
60
56
3
0
39
1.17
67009--67127
3
39.3
3
86
5
168
34
0
0
64
0.99
68124--68167
15
3.1
14
87
9
54
25
0
4
70
1.06
68143--68167
3
8.3
3
100
0
50
32
0
0
68
0.90
70634--70701
3
23.0
3
73
8
50
44
0
1
54
1.09
70627--70672
17
2.7
17
86
0
65
52
0
0
47
1.00
76081--76236
81
1.9
79
90
2
249
16
30
22
30
1.95
76330--76596
55
4.8
56
77
13
261
25
25
21
26
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76328--76595
27
9.7
28
67
17
112
25
25
22
26
2.00
76351--76654
55
5.5
55
79
8
251
25
25
21
27
1.99
76354--76650
109
2.7
110
82
5
307
24
25
21
27
2.00
79848--79882
17
2.1
17
100
0
70
45
5
37
11
1.64
83561--83635
31
2.5
31
84
6
100
34
2
14
48
1.58

Tables:   1

The End!