genome.fa.s3839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003839.1 Hibiscus syriacus cultivar Beakdansim tig00008228_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139013

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12377--12431	16	3.4	16	71	0	56	41	29	10	18	1.84
13494--13585	39	2.3	39	80	10	105	27	15	20	36	1.92
15507--15559	25	2.1	25	96	0	97	43	15	9	32	1.78
16360--16451	40	2.3	40	82	0	112	38	16	17	28	1.91
21731--21765	12	2.7	13	91	8	54	37	0	0	62	0.95
21963--22075	26	4.3	26	87	2	138	30	45	12	12	1.79
26741--26890	32	4.8	32	77	8	146	38	28	12	20	1.89
26834--26923	32	2.8	32	81	5	92	37	24	15	22	1.93
36399--36437	19	2.0	21	85	10	55	46	2	41	10	1.51
37611--37672	31	2.0	31	84	9	81	30	30	4	33	1.79
38056--38272	112	1.9	112	93	0	371	45	11	16	26	1.82
44537--44605	23	3.0	23	79	8	86	34	26	21	17	1.95
46252--46311	20	2.7	22	90	10	88	25	21	20	33	1.97
56008--56065	20	2.7	21	86	10	73	32	22	22	22	1.98
56878--56985	46	2.4	46	92	1	173	17	16	29	36	1.92
60170--60208	20	2.0	20	89	0	60	38	23	20	17	1.93
61039--61111	28	2.6	28	97	0	137	16	16	28	38	1.90
63897--63960	21	3.0	21	88	4	101	23	26	23	26	2.00
65359--65455	21	4.6	21	89	2	135	46	20	18	14	1.84
65702--65731	6	5.0	6	91	0	51	13	16	16	53	1.73
65717--65754	20	2.0	20	89	5	60	21	10	10	57	1.61
71729--71881	37	4.1	37	86	6	211	40	21	19	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71739--71919	36	5.0	36	81	8	190	39	23	19	18	1.92
71739--71917	73	2.5	72	85	4	236	39	22	19	18	1.92
71919--72661	215	3.5	214	90	3	1129	31	16	19	32	1.94
76153--76315	81	2.0	81	98	0	317	39	15	6	39	1.72
76556--76741	20	9.3	20	81	10	113	38	22	17	21	1.93
76551--76882	40	8.3	40	73	14	136	41	22	14	21	1.89
76551--76882	60	5.5	60	73	15	240	41	22	14	21	1.89
76736--76882	20	7.3	20	76	7	120	44	23	12	20	1.85
77042--77092	22	2.3	22	93	0	84	27	41	9	21	1.84
79412--79530	42	2.8	42	83	2	132	21	33	19	26	1.97
79412--79506	21	4.5	21	75	5	93	22	32	17	27	1.96
80921--80957	14	2.6	14	100	0	74	29	0	21	48	1.50
80866--81024	81	2.0	79	93	2	273	30	1	17	50	1.54
81080--81127	20	2.4	20	86	6	62	41	22	16	18	1.90
81123--81161	13	2.9	14	82	17	55	7	20	30	41	1.80
81123--81165	14	3.1	14	78	18	54	9	18	27	44	1.80
83667--83720	24	2.2	24	93	0	90	40	20	18	20	1.91
84475--84512	16	2.5	15	84	12	51	65	0	5	28	1.14
84670--84760	19	4.6	20	82	10	89	30	10	23	35	1.89
84670--84860	20	9.6	20	82	5	154	25	14	24	36	1.93
84748--84862	20	5.8	20	92	4	196	20	17	25	37	1.94
84727--84863	40	3.4	40	90	5	222	21	16	24	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92173--92213	8	5.2	8	82	5	57	34	0	29	36	1.58
92284--93424	128	8.9	128	97	0	2122	22	25	19	32	1.98
93824--93923	33	3.0	34	83	2	139	39	1	4	56	1.25
94443--94536	21	4.5	21	92	5	129	20	26	35	18	1.95
94540--94587	21	2.3	21	85	0	60	22	12	39	25	1.89
96314--96388	17	4.8	16	68	14	57	58	1	0	40	1.06
96314--96389	31	2.4	31	78	10	82	59	1	0	39	1.06
96346--96416	33	2.1	34	84	7	92	63	5	0	30	1.17
105272--105374	49	2.1	50	83	1	127	33	20	11	34	1.89
113707--113771	22	2.9	22	84	6	60	41	24	18	15	1.89
113721--113771	22	2.4	22	90	3	77	37	27	21	13	1.91
113721--113797	21	3.5	23	80	5	79	33	25	23	16	1.96
113909--114008	44	2.3	44	84	6	123	29	20	13	38	1.90
124868--124908	6	6.7	6	94	2	55	58	0	2	39	1.11
124979--125053	31	2.5	31	95	2	134	44	5	14	36	1.68
129448--129488	21	2.0	20	90	9	66	24	4	4	65	1.32
132996--133036	2	22.5	2	81	18	54	46	0	0	53	1.00
132975--133050	15	5.1	15	76	19	70	44	0	0	55	0.99
134295--134361	20	3.3	20	89	4	98	28	23	17	29	1.97
135245--135298	24	2.2	24	90	0	81	22	18	18	40	1.91
137730--137836	20	5.3	20	88	2	144	39	23	18	18	1.92
137814--137930	52	2.2	53	83	3	137	44	15	22	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137843--137930	19	4.8	19	74	16	87	46	15	20	17	1.84
137940--138023	33	2.5	33	90	1	123	15	22	19	42	1.88

Tables:   1

The End!