genome.fa.s384.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000384.1 Hibiscus syriacus cultivar Beakdansim tig00000705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128459

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3971--4024	6	9.0	6	80	8	56	75	0	9	14	1.03
3971--4024	12	4.5	12	84	6	65	75	0	9	14	1.03
3972--4024	18	2.9	18	86	5	72	75	0	9	15	1.04
9633--9666	15	2.3	15	89	0	50	70	0	8	20	1.13
9641--9675	15	2.4	15	90	4	54	65	2	5	25	1.28
11012--11049	19	2.0	19	100	0	76	36	26	5	31	1.79
15842--15876	19	1.9	17	88	11	52	25	25	8	40	1.84
16989--17025	14	2.5	15	95	4	67	24	24	27	24	2.00
27721--27796	31	2.4	31	80	2	89	26	31	27	14	1.95
27674--27796	63	2.0	63	82	6	151	25	29	28	17	1.97
32946--33021	31	2.4	31	80	2	89	26	31	27	14	1.95
32899--33021	63	2.0	63	82	6	151	25	29	28	17	1.97
39726--39761	15	2.4	15	95	0	63	8	5	25	61	1.46
41389--41463	21	3.6	21	83	0	87	25	8	17	49	1.73
41389--41468	42	1.9	42	86	0	115	26	7	17	48	1.73
41551--41707	85	1.9	84	91	1	260	26	21	20	31	1.98
41547--41707	42	3.8	42	84	6	218	25	21	21	31	1.98
41561--41725	42	3.9	42	81	11	178	25	21	20	32	1.97
42959--43040	39	2.1	38	84	8	112	26	12	10	50	1.73
43722--43777	28	2.0	28	89	0	85	55	5	10	28	1.56
44526--44564	2	19.5	2	100	0	78	51	0	0	48	1.00
45693--45737	22	2.2	21	82	17	60	35	4	0	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45701--45756	23	2.5	22	79	5	58	35	3	3	57	1.34
45912--45958	24	2.1	21	85	14	60	48	6	0	44	1.28
46583--46615	3	11.3	3	93	6	59	36	0	0	63	0.95
46996--47514	146	3.6	146	94	0	851	32	19	26	21	1.97
54324--54700	124	3.0	125	83	5	487	32	17	26	23	1.97
55512--55791	55	5.1	55	91	1	474	28	15	28	27	1.96
55512--55794	108	2.6	110	93	2	498	28	14	28	28	1.96
55787--56443	52	12.6	52	94	0	1134	28	16	25	29	1.97
56700--56731	3	11.3	3	87	12	50	34	0	0	65	0.93
57394--57448	20	2.8	20	91	5	76	25	30	12	30	1.93
64554--64931	125	3.0	125	84	3	485	32	17	26	23	1.97
66031--66171	36	3.9	36	76	2	104	37	21	19	21	1.94
66103--66181	36	2.2	36	83	0	104	39	24	15	21	1.91
66597--67490	158	5.6	158	85	4	1084	32	19	26	21	1.97
66597--67437	106	8.0	105	85	4	1034	32	19	26	21	1.97
66596--67513	54	17.3	55	83	6	639	32	19	26	21	1.97
67679--67709	3	10.7	3	93	6	55	35	0	0	64	0.94
68090--68608	146	3.6	146	94	0	851	32	19	26	21	1.97
68662--68714	26	2.0	26	89	7	81	22	13	3	60	1.49
75618--75662	23	2.0	23	86	0	63	40	17	0	42	1.50
78523--78637	61	1.9	61	85	3	160	22	17	27	32	1.96
78745--79049	45	6.8	45	91	1	472	38	6	20	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85575--85666	37	2.5	36	81	8	105	10	14	36	38	1.81
85874--85938	28	2.4	28	89	2	96	15	9	35	40	1.79
86549--86586	15	2.5	15	82	0	58	31	5	21	42	1.75
86808--86870	24	2.7	24	80	2	74	23	22	22	31	1.98
88034--88095	25	2.5	25	86	0	79	33	1	11	53	1.46
88037--88104	25	2.7	25	77	8	66	32	1	11	54	1.46
90917--90948	15	2.1	15	100	0	64	43	0	31	25	1.55
93910--93992	43	1.9	43	97	0	157	39	16	15	27	1.89
116484--116724	130	1.9	130	86	1	349	49	11	10	29	1.71
116869--116995	36	3.6	34	75	18	109	40	15	12	30	1.85
116832--117012	74	2.5	71	83	10	222	39	14	13	31	1.86
124188--124414	79	2.8	80	89	2	323	41	12	14	31	1.83
124189--124398	43	5.2	42	72	13	165	42	12	14	30	1.82

Tables:   1

The End!