Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003841.1 Hibiscus syriacus cultivar Beakdansim tig00008233_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89538

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2545--2591
25
2.0
25
84
15
66
51
4
0
44
1.21
2538--2584
21
2.1
23
92
7
80
53
4
0
42
1.20
4142--4217
3
25.3
3
91
0
125
35
0
1
63
1.03
9095--9129
17
2.1
16
89
5
52
48
0
0
51
1.00
10063--10232
6
31.4
5
76
16
80
47
2
0
48
1.21
10115--10326
2
109.0
2
79
16
216
50
4
0
43
1.27
11744--11778
18
1.9
18
88
0
52
45
0
2
51
1.16
15696--15848
77
2.0
79
84
5
204
43
5
11
39
1.64
18866--18902
15
2.4
16
82
13
51
45
0
13
40
1.43
24087--24122
2
18.0
2
100
0
72
50
0
0
50
1.00
24621--24688
23
3.0
23
84
0
91
17
25
27
29
1.97
26614--26646
15
2.2
15
100
0
66
39
0
24
36
1.56
29578--29645
23
3.0
23
77
0
73
19
23
25
32
1.97
33046--33091
2
23.0
2
95
0
83
50
0
2
47
1.13
35236--35281
23
2.0
22
83
4
56
17
4
17
60
1.51
36863--36901
14
2.9
13
88
7
60
28
23
20
28
1.99
39968--40026
30
2.0
30
86
0
82
47
13
8
30
1.73
41940--41973
5
6.8
5
89
0
50
5
20
52
20
1.67
41940--41973
15
2.3
15
100
0
68
5
20
52
20
1.67
41981--42025
9
4.6
10
84
10
58
35
28
22
13
1.92
48343--48452
19
5.7
19
81
9
116
30
29
24
15
1.96
48349--48451
29
3.5
29
77
9
102
32
30
23
14
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48343--48451
10
11.3
9
78
11
92
31
29
24
14
1.95
50661--50724
30
2.2
30
97
2
121
28
25
10
35
1.89
53239--53309
3
23.7
3
83
11
92
35
0
0
64
0.94
53236--53307
25
2.8
25
85
10
101
34
0
0
65
0.93
53654--53707
21
2.6
21
93
0
90
24
22
22
31
1.98
54076--54138
27
2.3
27
97
0
117
38
14
22
25
1.92
54622--54660
15
2.7
14
84
7
60
30
5
0
64
1.15
54827--54866
17
2.3
19
79
16
50
35
10
0
55
1.34
55472--55529
28
2.1
27
84
6
73
32
5
1
60
1.29
56635--56688
14
3.8
14
82
4
63
24
14
9
51
1.71
59666--59713
2
24.0
2
100
0
96
50
0
0
50
1.00
60007--60090
31
2.9
27
80
15
89
75
1
22
1
0.95
60321--60366
22
2.1
22
100
0
92
8
21
13
56
1.63
64972--65048
22
3.5
22
83
0
100
31
16
12
38
1.87
65755--65954
36
5.5
36
74
2
202
30
18
13
38
1.89
65755--65978
36
6.1
36
73
3
171
31
18
12
37
1.89
65757--65974
73
3.0
73
95
1
384
30
19
13
36
1.90
65980--66424
114
3.9
113
89
3
614
36
15
18
29
1.92
65980--66423
225
2.0
226
87
5
639
36
15
18
29
1.92
66652--66703
3
17.7
3
80
11
63
34
0
0
65
0.93
66649--66703
8
7.4
8
73
22
57
34
0
0
65
0.93
66646--66703
30
1.9
30
89
6
91
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68044--68093
3
17.0
3
78
12
50
30
4
2
64
1.23
68026--68093
35
1.9
36
90
3
111
30
5
2
60
1.35
72547--72671
60
2.1
60
96
0
232
34
4
28
33
1.76
72742--72861
32
3.8
32
89
0
186
34
10
15
39
1.83
72915--72955
20
2.1
19
86
4
55
48
2
0
48
1.14
82707--82749
2
22.0
2
95
4
79
51
0
0
48
1.00
82706--82759
8
7.4
7
82
17
58
51
0
0
48
1.00
85094--85152
29
2.0
29
90
0
91
25
10
11
52
1.69

Tables:   1

The End!