Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003842.1 Hibiscus syriacus cultivar Beakdansim tig00008234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87883

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10404--10428
13
1.9
13
100
0
50
56
8
12
24
1.62
16763--16801
12
3.5
11
83
16
53
7
10
0
82
0.86
20412--20465
18
3.0
18
80
0
63
16
14
42
25
1.87
21440--21548
36
3.1
35
76
10
96
20
19
20
40
1.92
23209--23257
19
2.6
19
83
0
62
36
26
6
30
1.81
27284--27323
18
2.2
18
100
0
80
30
10
12
47
1.74
30512--30552
20
2.0
21
95
4
75
14
14
34
36
1.87
40985--41040
22
2.7
20
81
10
67
30
17
26
25
1.97
40911--41109
94
2.1
95
88
0
292
35
16
23
25
1.95
41454--41916
59
7.9
59
87
1
637
32
13
21
32
1.92
42273--42467
68
2.9
68
95
0
354
31
14
25
28
1.95
47549--48101
68
8.1
68
87
1
768
29
13
25
31
1.94
48123--48399
45
6.1
45
86
0
338
48
6
16
27
1.71
48123--48399
135
2.0
137
85
1
378
48
6
16
27
1.71
56433--56472
20
2.0
20
100
0
80
35
20
25
20
1.96
59677--60018
44
8.0
44
81
8
400
24
21
12
41
1.88
59748--59865
43
3.0
37
75
13
119
27
20
11
40
1.87
59704--60018
124
2.5
125
81
6
350
24
20
12
42
1.86
65913--65944
16
2.0
16
93
0
55
53
12
12
21
1.71
65934--65963
15
2.0
15
100
0
60
53
13
6
26
1.64
66403--66435
16
2.1
16
94
0
57
51
27
0
21
1.48
68074--68113
20
2.0
20
100
0
80
50
15
10
25
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74302--74331
15
2.0
15
100
0
60
53
13
6
26
1.64
75191--75668
44
11.0
44
84
1
595
26
20
11
41
1.87
76171--76228
18
3.1
18
69
13
53
34
24
12
29
1.91
80370--80406
17
2.1
18
85
14
51
29
10
5
54
1.57
80566--80593
2
14.0
2
100
0
56
50
0
0
50
1.00
81794--81847
8
6.6
8
83
12
65
83
0
16
0
0.65
81795--81847
9
5.8
9
86
8
72
84
0
15
0
0.61
81794--81842
17
2.7
18
90
9
82
83
0
16
0
0.64
87242--87280
19
2.1
19
86
13
55
58
5
5
30
1.41

Tables:   1

The End!