Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003843.1 Hibiscus syriacus cultivar Beakdansim tig00008235_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187331

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6290--6326
16
2.2
17
90
4
58
24
0
8
67
1.17
9523--9556
16
2.1
17
94
5
61
32
0
23
44
1.54
13628--13652
7
3.6
7
100
0
50
16
12
56
16
1.68
15688--15783
33
2.9
34
87
7
135
36
21
16
25
1.94
20430--20465
15
2.5
14
90
4
54
22
8
0
69
1.15
35109--35147
20
2.0
20
84
0
51
17
12
7
61
1.54
39160--39351
46
4.2
46
85
2
269
21
26
9
42
1.84
39175--39745
26
24.5
25
65
22
255
22
23
11
42
1.86
39160--39352
92
2.1
92
89
1
298
22
25
9
41
1.84
39338--39778
46
9.6
46
89
1
632
23
21
12
42
1.86
39175--39515
164
2.1
164
88
0
493
22
24
10
42
1.85
39160--39559
210
1.9
210
87
3
590
23
23
10
42
1.85
39594--39673
20
3.7
20
69
18
61
21
25
15
38
1.92
46553--47144
46
12.9
46
85
1
758
21
21
11
44
1.84
46665--47143
20
20.8
24
66
23
214
21
21
12
44
1.85
56447--56499
2
26.5
2
100
0
106
49
0
0
50
1.00
57578--57609
15
2.1
15
100
0
64
43
12
6
37
1.68
63290--63392
34
3.0
34
100
0
206
26
11
26
35
1.90
66132--66157
12
2.2
12
100
0
52
23
23
23
30
1.99
69225--69283
23
2.5
24
78
8
68
76
1
1
20
0.96
69226--69275
15
3.3
15
81
15
59
78
2
2
18
0.95
69895--69957
19
3.2
19
75
4
54
55
12
0
31
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77651--77761
19
5.8
19
69
14
59
57
14
0
27
1.43
77587--77714
65
2.0
65
86
6
179
56
13
0
29
1.43
89720--89760
19
2.2
19
90
0
64
26
24
29
19
1.98
90535--90633
27
3.7
27
86
0
117
47
26
5
21
1.71
93459--93760
106
2.8
104
83
8
362
42
14
17
25
1.87
97054--97121
23
3.0
23
80
0
82
1
16
39
42
1.57
105359--105440
29
2.8
29
86
0
119
48
21
7
21
1.74
105448--105476
13
2.3
13
94
5
51
13
24
44
17
1.85
112839--112912
29
2.5
28
91
4
103
45
21
9
22
1.80
113594--113661
29
2.4
28
78
9
75
50
19
2
27
1.62
113645--113747
29
3.6
29
86
0
143
44
20
8
26
1.80
113764--113797
13
2.7
13
90
4
52
17
20
44
17
1.87
113777--113816
17
2.3
18
95
4
73
12
22
47
17
1.81
115211--115236
10
2.6
10
100
0
52
30
30
30
7
1.85
117505--117529
10
2.5
10
100
0
50
32
40
0
28
1.57
136325--136365
21
1.9
22
85
5
57
29
7
12
51
1.66
136763--136813
25
2.0
25
96
0
93
15
9
15
58
1.62
137169--137207
3
13.0
3
94
0
69
33
0
2
64
1.08
138252--138357
53
2.0
53
96
0
194
24
22
27
25
2.00
141058--141101
21
2.2
19
88
8
61
15
4
4
75
1.14
141059--141101
20
2.2
19
87
4
59
16
4
4
74
1.16
142899--142951
21
2.5
21
81
0
61
41
16
20
20
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
144533--144568
11
3.3
11
84
0
54
13
8
5
72
1.27
148625--148678
14
3.8
14
82
2
63
25
40
16
16
1.89
148680--148707
14
2.0
14
100
0
56
14
21
21
42
1.88
153444--153512
29
2.4
29
85
0
84
49
15
2
31
1.60
153553--153620
29
2.3
29
82
0
91
41
25
4
29
1.75
157338--157384
21
2.2
21
88
0
67
40
17
14
27
1.89
163063--163088
2
13.0
2
100
0
52
50
0
0
50
1.00
170899--171088
76
2.6
75
87
5
255
57
12
0
29
1.40
170905--171124
76
3.0
74
81
10
254
56
11
0
30
1.41
172742--172829
5
17.0
5
68
11
52
69
1
7
21
1.21
172734--172834
16
6.7
14
69
11
51
70
0
6
21
1.17
172780--172829
21
2.4
21
86
0
73
74
2
8
16
1.15
179009--179121
19
6.0
19
68
12
63
56
13
0
29
1.43
178945--179126
75
2.5
74
89
5
264
57
12
1
29
1.42
178945--179163
75
3.0
74
81
9
218
57
11
1
29
1.44
179418--179493
23
3.3
23
83
9
102
51
14
6
27
1.67
183264--183304
21
1.9
22
85
5
57
29
7
12
51
1.66

Tables:   1

The End!