Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003844.1 Hibiscus syriacus cultivar Beakdansim tig00008242_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  412420

Tables:   1   2   

This is table  2  of  2  ( 145 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
356386--356445
25
2.5
25
83
5
79
6
16
13
63
1.50
367511--367590
35
2.2
36
93
2
135
30
38
3
27
1.74
369678--369729
24
2.3
22
77
9
61
34
19
21
25
1.96
371654--371731
36
2.2
36
90
2
122
30
38
2
28
1.70
371654--371731
11
6.6
11
74
21
61
30
38
2
28
1.70
371654--371741
35
2.5
36
86
1
115
31
36
2
29
1.70
372965--373011
11
4.1
11
80
20
60
25
2
36
36
1.68
372965--373011
24
2.0
24
84
15
64
25
2
36
36
1.68
372965--373044
35
2.2
37
88
4
119
27
2
37
32
1.70
376848--376894
11
4.1
11
77
20
51
27
2
34
36
1.69
376848--376923
35
2.1
37
85
4
102
28
2
35
32
1.71
380911--380949
17
2.3
18
82
13
55
2
17
10
69
1.28
380911--380956
17
2.8
16
81
18
51
2
17
10
69
1.27
381429--381488
25
2.4
25
100
0
120
36
11
3
48
1.56
383078--383122
20
2.1
22
88
8
67
44
6
13
35
1.70
391212--391262
23
2.2
23
96
0
93
19
41
9
29
1.84
391722--391764
13
3.2
13
80
6
50
0
11
6
81
0.87
392368--392479
36
3.1
36
93
1
190
27
3
37
31
1.74
396114--396165
15
3.4
15
75
15
52
67
0
17
15
1.24
396817--396921
36
2.9
36
94
1
185
27
4
38
29
1.77
399757--399827
22
3.2
22
87
0
79
28
33
4
33
1.77
399797--399863
35
1.9
35
100
0
134
26
40
2
29
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
399990--400037
15
3.0
16
87
6
62
20
29
0
50
1.49
401898--401947
15
3.4
15
72
22
52
78
2
16
4
1.00
409571--409601
12
2.6
12
94
0
53
45
0
29
25
1.54

Tables:   1   2

The End!