Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003846.1 Hibiscus syriacus cultivar Beakdansim tig00008252_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85607

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
823--874
24
2.2
24
92
0
86
15
7
32
44
1.75
2693--2760
29
2.3
29
89
0
109
27
5
25
41
1.78
2693--2769
29
2.7
29
85
0
82
28
6
22
42
1.78
2788--2870
29
2.9
29
80
1
87
34
2
14
48
1.57
7614--7666
13
3.8
14
80
5
63
16
16
39
26
1.91
11612--11653
19
2.3
19
87
4
59
69
0
7
23
1.13
17583--17643
25
2.5
25
85
15
76
68
4
11
14
1.35
19565--19595
3
10.3
3
100
0
62
35
0
0
64
0.94
20369--20409
21
1.9
22
85
5
57
51
12
7
29
1.66
24528--24571
18
2.6
18
89
7
65
75
4
6
13
1.17
24672--24724
24
2.4
22
77
22
58
58
13
5
22
1.56
29174--29214
21
1.9
22
85
5
57
51
12
7
29
1.66
37876--38112
106
2.2
107
89
6
358
25
16
13
44
1.84
37916--38210
106
2.8
106
84
5
328
26
17
13
42
1.86
40960--41033
27
2.7
27
85
0
112
22
6
22
47
1.75
41832--41869
19
2.0
19
89
0
58
21
26
26
26
1.99
59269--59317
19
2.6
18
78
9
53
22
4
2
71
1.13
64804--64859
5
11.6
5
86
7
53
23
10
0
66
1.23
66559--66621
19
3.2
19
75
4
54
31
0
12
55
1.37
67248--67290
19
2.3
19
88
4
61
20
4
0
74
1.00
67839--67868
2
15.0
2
100
0
60
50
0
0
50
1.00
67876--67904
14
2.0
15
93
6
51
34
3
27
34
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73197--73228
2
17.0
2
87
12
50
50
0
0
50
1.00
73322--73390
34
2.0
34
97
0
129
36
27
10
26
1.88
75406--75678
135
2.0
135
86
2
377
30
20
19
29
1.97
78664--78697
15
2.3
15
100
0
68
35
8
11
44
1.72

Tables:   1

The End!