Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003847.1 Hibiscus syriacus cultivar Beakdansim tig00008253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96936

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
238--273
14
2.5
14
95
4
63
47
0
0
52
1.00
7387--7434
22
2.2
21
85
3
60
33
8
12
45
1.72
16067--16122
29
1.9
29
82
13
71
69
0
3
26
1.04
16796--16859
33
1.9
33
84
6
85
56
3
18
21
1.56
18300--18340
20
2.0
20
85
0
55
31
24
24
19
1.98
18890--18931
22
1.9
22
90
0
66
26
21
26
26
1.99
28535--28573
5
7.4
5
88
11
60
20
35
25
17
1.95
28535--28573
16
2.4
16
100
0
78
20
35
25
17
1.95
28535--28573
11
3.7
10
90
10
60
20
35
25
17
1.95
28782--28815
14
2.4
14
85
0
50
47
20
2
29
1.65
28866--28911
7
6.6
7
87
0
65
50
32
0
17
1.47
28865--28904
21
1.9
21
100
0
80
50
32
0
17
1.47
32391--32434
2
22.0
2
100
0
88
50
0
0
50
1.00
32753--32795
21
2.1
21
87
12
63
20
20
23
34
1.96
33340--33394
3
18.7
3
96
3
103
65
0
0
34
0.93
33567--33826
91
2.9
91
93
1
443
26
20
11
40
1.87
33759--34370
136
4.5
135
88
2
883
26
22
16
33
1.95
33759--34370
271
2.3
271
90
2
955
26
22
16
33
1.95
34780--34943
65
2.4
68
78
11
176
36
14
17
31
1.90
34883--34973
39
2.3
39
90
3
139
39
13
17
29
1.88
34882--35256
40
9.4
40
88
4
428
41
12
16
30
1.84
34922--35265
80
4.3
80
90
0
510
41
12
16
30
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34946--35265
120
2.7
120
91
0
523
41
11
16
30
1.84
36554--36860
41
7.7
41
66
20
161
30
24
13
31
1.94
36515--36884
119
3.1
120
92
3
579
30
23
14
31
1.94
36550--36884
117
2.8
117
94
1
573
29
23
14
31
1.94
44459--44519
2
31.0
2
96
3
115
50
0
0
49
1.00
44828--44866
20
1.9
21
89
5
62
17
28
23
30
1.97
45415--45482
3
22.7
3
100
0
136
66
0
0
33
0.92
45851--45901
11
4.5
11
80
4
57
31
23
21
23
1.98
45850--45901
23
2.3
22
90
3
77
30
23
21
25
1.99
45895--45938
13
3.5
13
77
22
58
13
29
31
25
1.94
45884--45950
24
2.8
24
95
0
116
14
29
29
25
1.95
45908--45949
11
3.6
11
77
22
50
11
28
33
26
1.92
55774--55834
28
2.2
28
100
0
122
40
6
13
39
1.70
61631--61690
17
3.6
16
77
6
57
28
26
40
5
1.77
61931--62239
152
2.0
154
98
1
595
38
11
17
31
1.86
62197--62228
12
2.7
12
100
0
64
28
18
25
28
1.98
76593--76622
3
10.0
3
100
0
60
0
33
0
66
0.92
83273--83310
20
1.9
20
88
0
58
63
2
2
31
1.22
94636--94694
24
2.5
24
77
0
64
27
11
16
44
1.83

Tables:   1

The End!