genome.fa.s3848.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003848.1 Hibiscus syriacus cultivar Beakdansim tig00008256_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  200949

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2467--2565	25	4.0	25	94	1	164	28	15	19	37	1.92
2657--2699	3	14.7	3	80	4	52	60	2	4	32	1.30
2901--3144	90	2.7	90	87	4	316	25	19	29	26	1.99
17731--17829	25	4.0	25	92	3	157	29	15	19	36	1.92
17958--18007	3	16.7	3	80	15	59	64	0	0	36	0.94
17946--18007	10	5.8	10	83	16	72	61	0	0	38	0.96
24266--24352	37	2.4	36	84	7	122	33	4	19	42	1.72
28847--28910	21	3.4	20	66	29	59	31	4	18	45	1.70
28839--28960	35	3.4	36	87	6	176	32	4	18	43	1.72
31139--31171	13	2.5	13	86	13	50	6	33	0	60	1.21
32310--32376	3	23.0	3	78	6	75	61	0	2	35	1.12
32781--32907	42	3.0	41	87	3	164	33	22	19	24	1.97
32840--32903	22	3.0	22	65	9	60	37	23	15	23	1.93
36442--36472	8	4.0	8	95	4	55	0	12	0	87	0.55
41911--41960	23	2.3	20	75	18	55	68	0	6	26	1.13
43274--43348	3	26.0	3	81	8	93	64	0	1	34	1.02
45511--45547	6	6.2	6	93	0	65	35	16	29	18	1.93
45509--45553	18	2.5	19	85	10	67	37	15	28	17	1.91
47842--47871	2	15.0	2	100	0	60	50	0	0	50	1.00
50397--50581	60	3.1	59	78	6	160	38	6	22	32	1.80
50878--50903	2	13.0	2	100	0	52	50	0	0	50	1.00
52790--52937	74	2.0	74	100	0	296	25	27	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69504--69689	99	1.9	99	88	2	284	50	15	22	11	1.76
75100--75143	20	2.1	20	87	8	61	34	4	0	61	1.16
75528--75575	23	2.1	23	92	0	78	39	8	18	33	1.81
75491--75653	87	1.9	87	98	0	317	41	12	13	32	1.81
75671--76378	199	3.5	199	83	6	806	30	16	14	38	1.89
78826--79434	200	3.0	199	86	2	862	32	16	13	38	1.87
79378--79487	51	2.1	52	83	9	145	24	19	17	39	1.92
79184--79636	251	1.8	251	89	1	721	31	16	14	37	1.89
80240--80279	17	2.4	17	100	0	80	22	22	10	45	1.82
85073--85122	21	2.4	21	89	0	73	26	22	24	28	1.99
85136--85177	21	2.0	21	90	0	66	33	23	19	23	1.97
88712--88805	47	2.0	47	100	0	188	25	34	14	25	1.94
89416--89459	18	2.4	18	81	7	54	34	4	34	27	1.77
89768--90726	200	4.8	199	92	1	1526	32	15	14	36	1.88
89768--90726	399	2.4	400	91	1	1575	32	15	14	36	1.88
90950--91016	19	3.6	19	89	2	91	52	10	1	35	1.45
91598--94361	4	705.2	4	91	6	4268	48	24	2	25	1.63
95331--95371	21	2.0	21	90	0	64	4	41	0	53	1.22
95556--95621	33	2.0	33	93	0	114	22	46	0	30	1.52
95655--95719	21	3.1	21	93	0	103	15	30	10	43	1.81
97961--98007	20	2.3	20	78	7	60	19	21	10	48	1.78
97928--98402	182	2.6	182	90	1	738	27	16	14	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101458--101542	23	3.9	22	84	7	102	17	23	25	32	1.97
101525--101570	24	1.9	24	86	0	65	17	23	21	36	1.94
108270--108338	23	3.0	23	84	0	102	30	26	26	17	1.97
112649--112682	11	3.1	11	91	0	50	20	41	20	17	1.91
113373--113435	23	2.7	23	82	0	81	31	23	25	19	1.98
113831--113867	2	18.5	2	94	0	65	48	0	2	48	1.15
114546--114597	20	2.6	19	76	11	50	34	19	0	46	1.50
116151--116189	17	2.3	17	86	8	53	43	0	15	41	1.46
118701--118741	13	3.3	13	83	6	50	34	0	0	65	0.93
118703--118762	4	14.5	4	73	13	50	30	3	0	66	1.07
121136--121167	15	2.1	15	100	0	64	46	0	12	40	1.42
121136--121167	7	4.2	8	88	11	50	46	0	12	40	1.42
121937--122252	103	3.1	103	97	0	587	26	13	23	36	1.92
122268--122336	23	3.0	23	78	0	75	23	26	23	27	2.00
128646--128690	2	23.0	2	86	4	65	53	0	0	46	1.00
142051--142124	19	3.5	21	70	25	59	68	4	2	24	1.19
143877--143987	42	2.7	41	81	2	132	35	23	17	24	1.95
143868--144009	41	3.5	40	80	3	140	34	23	17	24	1.96
143678--144268	300	2.0	299	90	1	943	33	17	16	31	1.93
143915--144752	251	3.3	251	83	5	945	33	18	15	32	1.93
162885--163013	2	69.0	2	68	26	79	41	0	4	53	1.21
162885--163014	9	14.0	9	74	21	85	41	0	4	53	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162891--162964	5	15.6	5	78	18	79	40	0	2	56	1.13
162886--163014	7	19.1	7	76	17	89	41	0	4	54	1.21
166542--166575	14	2.4	14	95	0	59	20	8	35	35	1.84
173912--173956	21	2.2	20	84	8	54	51	2	6	40	1.41
176407--176435	2	14.5	2	100	0	58	48	0	0	51	1.00
180031--180096	30	2.2	30	82	12	75	36	28	6	28	1.81
183566--183672	32	3.0	32	81	18	124	26	15	3	54	1.58
184384--184536	65	2.4	64	82	3	182	30	17	22	30	1.97
184900--184933	12	2.7	13	86	9	52	41	5	8	44	1.60
185938--186040	44	2.3	44	85	3	145	29	17	21	32	1.96
189706--189745	20	2.0	21	85	5	55	25	17	10	47	1.78
193709--193751	17	2.6	16	89	7	68	39	0	2	58	1.11

Tables:   1

The End!