Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003849.1 Hibiscus syriacus cultivar Beakdansim tig00008261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 89469
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:9050 original size:22 final size:23
Alignment explanation
Indices: 9022--9072 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
9012 AAATTGAAGA
*
9022 AAAAAAT-TTCATTGTTTAGAAC
1 AAAAAATGTTCACTGTTTAGAAC
**
9044 AAAAAATGTTCACTGTTTCTAAC
1 AAAAAATGTTCACTGTTTAGAAC
9067 AAAAAA
1 AAAAAA
9073 AAAAGAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (23 bp):
AAAAAATGTTCACTGTTTAGAAC
Found at i:10820 original size:17 final size:17
Alignment explanation
Indices: 10795--10828 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10785 CTTTATCTCA
*
10795 ATTTATTTATTTTATTT
1 ATTTATTTATTTAATTT
*
10812 ATTTGTTTATTTAATTT
1 ATTTATTTATTTAATTT
10829 TTATCTCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTATTTATTTAATTT
Found at i:16322 original size:23 final size:26
Alignment explanation
Indices: 16269--16317 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
16259 ATATCACTGG
*
16269 TTAATATGACATATTATTCTTTTAGA
1 TTAATATAACATATTATTCTTTTAGA
* *
16295 ATAATATAACATA-TATTTTTTTA
1 TTAATATAACATATTATTCTTTTA
16318 TTAATTTAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 9 0.45
26 11 0.55
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (26 bp):
TTAATATAACATATTATTCTTTTAGA
Found at i:16373 original size:15 final size:14
Alignment explanation
Indices: 16343--16378 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
16333 TACAAATGAT
16343 AATATATATTTTAAA
1 AATAT-TATTTTAAA
16358 AATATTATTTTAAA
1 AATATTATTTTAAA
16372 AATATTA
1 AATATTA
16379 AATCATTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AATATTATTTTAAA
Found at i:16818 original size:19 final size:20
Alignment explanation
Indices: 16784--16824 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
16774 TGCAATTTAA
*
16784 TATATATATAAACAAATTGT
1 TATAAATATAAACAAATTGT
16804 TATAAATAT-AACAAATTGT
1 TATAAATATAAACAAATTGT
16823 TA
1 TA
16825 AGTTGAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (20 bp):
TATAAATATAAACAAATTGT
Found at i:20382 original size:35 final size:35
Alignment explanation
Indices: 20343--20427 Score: 152
Period size: 35 Copynumber: 2.4 Consensus size: 35
20333 AGTACATAGC
*
20343 AACTAACCAATCCCTGAAGTTTGCAACCTTATTTG
1 AACTAACCAATCCCTGAAGTTTGCAACCTCATTTG
*
20378 AACTAACCAATCCTTGAAGTTTGCAACCTCATTTG
1 AACTAACCAATCCCTGAAGTTTGCAACCTCATTTG
20413 AACTAACCAATCCCT
1 AACTAACCAATCCCT
20428 AATTTAACAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.29
Consensus pattern (35 bp):
AACTAACCAATCCCTGAAGTTTGCAACCTCATTTG
Found at i:35482 original size:23 final size:22
Alignment explanation
Indices: 35418--35485 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 22
35408 GTCGAGAGTT
*
35418 CTATGTGGTCCTTCGGGATAAA
1 CTATGTGGTCCTTCGGGACAAA
*
35440 ATCATGTGGTCCTTCGGGACAAA
1 CT-ATGTGGTCCTTCGGGACAAA
35463 CCTATGTGGTCCTTCGGGACAAA
1 -CTATGTGGTCCTTCGGGACAAA
35486 TTATACGAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
22 1 0.02
23 39 0.95
24 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (22 bp):
CTATGTGGTCCTTCGGGACAAA
Found at i:37777 original size:3 final size:3
Alignment explanation
Indices: 37760--37822 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
37750 CTACCAAAAA
* * * *
37760 TAT TAT T-T TATT TAT TAT TAG CAT TATT TAC TAT TAT TAT TAT TGT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
*
37806 TAT TAT TAT TAA TAT TA
1 TAT TAT TAT TAT TAT TA
37823 CCTATTACAT
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
2 2 0.04
3 39 0.83
4 6 0.13
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:38649 original size:21 final size:21
Alignment explanation
Indices: 38625--38670 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
38615 AAAGAAAAAA
*
38625 AGAAAAAGGGGAAGAGTAGAG
1 AGAAAAAGGAGAAGAGTAGAG
** *
38646 AGAATGAGGAGAAGAGTTGAG
1 AGAAAAAGGAGAAGAGTAGAG
38667 AGAA
1 AGAA
38671 TTATTTTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.41, T:0.09
Consensus pattern (21 bp):
AGAAAAAGGAGAAGAGTAGAG
Found at i:43054 original size:10 final size:10
Alignment explanation
Indices: 43041--43083 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
43031 CAAATCAAAG
43041 AAAAAAAT-A
1 AAAAAAATAA
43050 AAAAAAATAA
1 AAAAAAATAA
43060 AAAAAAATAA
1 AAAAAAATAA
*
43070 AAAATAAAGAA
1 AAAA-AAATAA
43081 AAA
1 AAA
43084 GAAGACAAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
9 8 0.26
10 15 0.48
11 8 0.26
ACGTcount: A:0.88, C:0.00, G:0.02, T:0.09
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:43055 original size:9 final size:9
Alignment explanation
Indices: 43041--43083 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
43031 CAAATCAAAG
43041 AAAAAAATA
1 AAAAAAATA
43050 AAAAAAATA
1 AAAAAAATA
43059 AAAAAAA-A
1 AAAAAAATA
*
43067 TAAAAAATA
1 AAAAAAATA
43076 AAGAAAAA
1 AA-AAAAA
43084 GAAGACAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
8 7 0.23
9 18 0.60
10 5 0.17
ACGTcount: A:0.88, C:0.00, G:0.02, T:0.09
Consensus pattern (9 bp):
AAAAAAATA
Found at i:43063 original size:17 final size:17
Alignment explanation
Indices: 43041--43083 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
43031 CAAATCAAAG
43041 AAAAAAATAA-AAAAAAT
1 AAAAAAA-AATAAAAAAT
43058 AAAAAAAAATAAAAAAT
1 AAAAAAAAATAAAAAAT
43075 AAAGAAAAA
1 AAA-AAAAA
43084 GAAGACAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.08
17 17 0.71
18 5 0.21
ACGTcount: A:0.88, C:0.00, G:0.02, T:0.09
Consensus pattern (17 bp):
AAAAAAAAATAAAAAAT
Found at i:44173 original size:34 final size:33
Alignment explanation
Indices: 44113--44182 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 33
44103 AGAATCAGTG
*
44113 TTGAAGAAATCAAAATCGAATATTGGGGCATCT
1 TTGAAGAAATCAAAATCAAATATTGGGGCATCT
*
44146 TTGAAGCAAA-CAACATCAAATGATTGGGGCATCT
1 TTGAAG-AAATCAAAATCAAAT-ATTGGGGCATCT
44180 TTG
1 TTG
44183 GGGATTCAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 15 0.45
34 18 0.55
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.27
Consensus pattern (33 bp):
TTGAAGAAATCAAAATCAAATATTGGGGCATCT
Found at i:44706 original size:31 final size:31
Alignment explanation
Indices: 44671--44731 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 31
44661 CCTTGAGGCA
*
44671 GTTTCTCTGGAAATACAAA-ATCTTTGAGTTT
1 GTTTCTCTGGAAACA-AAACATCTTTGAGTTT
*
44702 GTTTCTCTTGAAACAAAACCATCTTTGAGT
1 GTTTCTCTGGAAACAAAA-CATCTTTGAGT
44732 CGTTTCCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 3 0.12
31 13 0.50
32 10 0.38
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (31 bp):
GTTTCTCTGGAAACAAAACATCTTTGAGTTT
Found at i:44774 original size:98 final size:97
Alignment explanation
Indices: 44592--44818 Score: 227
Period size: 99 Copynumber: 2.3 Consensus size: 97
44582 CAAAATTTAT
* * *
44592 AATCTTTGAGTTAGTTTCTCTTGAAAC--ACCCACATTTGAGATCGTTTCTATTGAAAAAGTTTT
1 AATCTTTGAGTTTGTTTCTCTTGAAACAAAACCACATTTGAGATCGTTTCCATTGAAAAAG-TTT
* *
44655 TGTCTCCCTTGAGGCAGTTTCTCTGGAAATAC-AA
65 TGTCTACCTTGAGACAGTTTCTCT-GAAA-ACAAA
44689 AATCTTTGAGTTTGTTTCTCTTGAAACAAAACCATC-TTTGAG-TCGTTTCCCA-TGAAATGAA-
1 AATCTTTGAGTTTGTTTCTCTTGAAACAAAACCA-CATTTGAGATCGTTT-CCATTGAAA--AAG
* * *
44750 TTTTGTCTATCTTGAGACATTTTCTCTTAAAACAAA
62 TTTTGTCTACCTTGAGACAGTTTCTCTGAAAACAAA
*
44786 ATCATCTTTGAGTCTGTTTCT-TTGGAAACAAAA
1 A--ATCTTTGAGTTTGTTTCTCTT-GAAACAAAA
44819 TTTTGTCTCA
Statistics
Matches: 111, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
96 2 0.02
97 32 0.29
98 36 0.32
99 38 0.34
100 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (97 bp):
AATCTTTGAGTTTGTTTCTCTTGAAACAAAACCACATTTGAGATCGTTTCCATTGAAAAAGTTTT
GTCTACCTTGAGACAGTTTCTCTGAAAACAAA
Found at i:44971 original size:65 final size:63
Alignment explanation
Indices: 44856--44981 Score: 155
Period size: 63 Copynumber: 2.0 Consensus size: 63
44846 GAAAACAAAG
* **
44856 TTTTGTCTCTCTTGAGACAATTTCTTTTGAAAAAATCTTTGAATTTGTTTCT-TTGGAAACAAT
1 TTTTGTCTCTCTTGAGACAATTTCTTTCGAAAAAATCTTTGAATGAGTTTCTCTT-GAAACAAT
* * * *
44919 TTTTTTCTCTTTTGAGACAGTTTCTTTCGAAGGAAAATCTTTGAGTGAGTTTCTCTTGAAACA
1 TTTTGTCTCTCTTGAGACAATTTCTTTCGAA--AAAATCTTTGAATGAGTTTCTCTTGAAACA
44982 TCTGTCTATG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
63 27 0.51
65 24 0.45
66 2 0.04
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.46
Consensus pattern (63 bp):
TTTTGTCTCTCTTGAGACAATTTCTTTCGAAAAAATCTTTGAATGAGTTTCTCTTGAAACAAT
Found at i:45232 original size:29 final size:29
Alignment explanation
Indices: 45178--45250 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
45168 TCTCGAGATA
* *
45178 ATTTCTTTTGAGAAAATCATCTTTGAGTCT
1 ATTTCTTTTGA-AACATCATCTTTGAGTCG
45208 ATTTCTTTTGAAACATCATCTTTGAGTCG
1 ATTTCTTTTGAAACATCATCTTTGAGTCG
* *
45237 GTTTCTCTTGAAAC
1 ATTTCTTTTGAAAC
45251 CATTATCCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 28 0.72
30 11 0.28
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (29 bp):
ATTTCTTTTGAAACATCATCTTTGAGTCG
Found at i:45496 original size:131 final size:132
Alignment explanation
Indices: 45361--45605 Score: 296
Period size: 134 Copynumber: 1.8 Consensus size: 132
45351 TATTCCATCT
* * ** *
45361 TCATCACGTAGGAACCGTGTTATCA-TTCCTAAAGATGG-TATGCCATCCTCATCATGTAAGAAT
1 TCATCACGTAGGAACCGAGTTATCACTTCCTAAAGATGGCCATAAC-TCCTCATCACGTAAGAAT
* * *
45424 CGTGTCATCCATAGGCTAGACCTCCTCATCACGTAGGAGCCATGTCACCCCTAGATAACCAGTCG
65 CGTGTCATCCACAGACCAGACCTCCTCATCACGTAGGAGCCATGTCACCCCTAGATAACCAGTCG
45489 TAC
130 TAC
** * * *
45492 TCATCGTGTAGGAACCGAGTTATCACTCTTCCTAAAGATGGCCATAACTCTTCATCACGTATGAG
1 TCATCACGTAGGAACCGAGTTATCA--CTTCCTAAAGATGGCCATAACTCCTCATCACGTAAGAA
* * * *
45557 TCGTGTCATCCACCGACCAGATCTCGTCATCACGTAGGAGCCTTGTCAC
64 TCGTGTCATCCACAGACCAGACCTCCTCATCACGTAGGAGCCATGTCAC
45606 ATTTAGACGA
Statistics
Matches: 93, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
131 22 0.24
134 68 0.73
135 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (132 bp):
TCATCACGTAGGAACCGAGTTATCACTTCCTAAAGATGGCCATAACTCCTCATCACGTAAGAATC
GTGTCATCCACAGACCAGACCTCCTCATCACGTAGGAGCCATGTCACCCCTAGATAACCAGTCGT
AC
Found at i:45819 original size:3 final size:3
Alignment explanation
Indices: 45802--45854 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
45792 CTACCAAAAA
* *
45802 TAT TAT T-T TATT TAT TAT TAT TAT TAT TTT TAT TGT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
45847 TAA TAT TA
1 TAT TAT TA
45855 CCTATTATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.88
4 3 0.07
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:63743 original size:23 final size:23
Alignment explanation
Indices: 63711--63771 Score: 113
Period size: 23 Copynumber: 2.7 Consensus size: 23
63701 CTTGTATAAA
*
63711 TGCACTGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
63734 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
63757 TGCACCGAAGTGCCA
1 TGCACCGAAGTGCCA
63772 TATAAAATGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.18
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:68262 original size:5 final size:5
Alignment explanation
Indices: 68252--68300 Score: 71
Period size: 5 Copynumber: 9.4 Consensus size: 5
68242 CGGTCAACAA
*
68252 TCGGG TCGGG TCGGG TCAACGG TCGGG TCGGG TCGGG TCGGG TCGGG TC
1 TCGGG TCGGG TCGGG TC--GGG TCGGG TCGGG TCGGG TCGGG TCGGG TC
68301 AAACCGGTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
5 36 0.90
7 4 0.10
ACGTcount: A:0.04, C:0.22, G:0.53, T:0.20
Consensus pattern (5 bp):
TCGGG
Found at i:68271 original size:22 final size:22
Alignment explanation
Indices: 68243--68290 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
68233 AACGGTCAAC
68243 GGTCAACAATCGGGTCGGGTCG
1 GGTCAACAATCGGGTCGGGTCG
**
68265 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACAATCGGGTCGGGTCG
68287 GGTC
1 GGTC
68291 GGGTCGGGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.12, C:0.23, G:0.46, T:0.19
Consensus pattern (22 bp):
GGTCAACAATCGGGTCGGGTCG
Found at i:68344 original size:20 final size:19
Alignment explanation
Indices: 68298--68344 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
68288 GTCGGGTCGG
* *
68298 GTCAAACCGGTTCGAACCT
1 GTCAAACCGGTTCAAACCA
68317 GTCGAAACCGGTTCAAAACCA
1 GTC-AAACCGGTTC-AAACCA
68338 GTCAAAC
1 GTCAAAC
68345 TGATTTTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 14 0.58
21 7 0.29
ACGTcount: A:0.34, C:0.30, G:0.19, T:0.17
Consensus pattern (19 bp):
GTCAAACCGGTTCAAACCA
Found at i:70265 original size:51 final size:51
Alignment explanation
Indices: 70205--70310 Score: 178
Period size: 51 Copynumber: 2.0 Consensus size: 51
70195 TATGGACTAC
70205 TATGAGCCTCCGTAAGGATAATCTACCTCAAACTCAG-CATCCGGAACACAA
1 TATGAGCCTCCGTAAGGATAATCTACCTC-AACTCAGACATCCGGAACACAA
70256 TATGAGCCTCCGTAAGGATAATCTACCTCAACTCAGCATCATCCGGAACACAA
1 TATGAGCCTCCGTAAGGATAATCTACCTCAACTCAG-A-CATCCGGAACACAA
70309 TA
1 TA
70311 CCGACCTTTG
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
50 7 0.13
51 29 0.56
53 16 0.31
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.21
Consensus pattern (51 bp):
TATGAGCCTCCGTAAGGATAATCTACCTCAACTCAGACATCCGGAACACAA
Found at i:81438 original size:16 final size:16
Alignment explanation
Indices: 81417--81451 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
81407 TCTTTTGTAA
81417 CTGTTCTTTGGAAAGT
1 CTGTTCTTTGGAAAGT
81433 CTGTTCTTTGGAAAGT
1 CTGTTCTTTGGAAAGT
81449 CTG
1 CTG
81452 AAATGAACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.14, G:0.26, T:0.43
Consensus pattern (16 bp):
CTGTTCTTTGGAAAGT
Found at i:86612 original size:16 final size:16
Alignment explanation
Indices: 86591--86634 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
86581 TAATAAATAA
*
86591 ACGAACACAAACGAAC
1 ACGAACATAAACGAAC
*
86607 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
86623 ACGAACATAAAC
1 ACGAACATAAAC
86635 ATTGGAGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.57, C:0.25, G:0.11, T:0.07
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:86806 original size:12 final size:12
Alignment explanation
Indices: 86789--86817 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
86779 ATAATATTAA
86789 AGCTCGATTCTG
1 AGCTCGATTCTG
86801 AGCTCGATTCTG
1 AGCTCGATTCTG
86813 AGCTC
1 AGCTC
86818 AACATTACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.28, G:0.24, T:0.31
Consensus pattern (12 bp):
AGCTCGATTCTG
Done.