Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01003850.1 Hibiscus syriacus cultivar Beakdansim tig00008262_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 524162
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 3 of 3

Found at i:520400 original size:134 final size:133

Alignment explanation


    Indices: 519885--520370  Score: 641
    Period size: 134  Copynumber: 3.6  Consensus size: 133

     519875 AATCATTATC

                      *                         *            *               
     519885 CCTAAAGATGACCAAGAACTCTTCATCACGTATGAGTAGTGTCATCCCCTGACCAGATCTCCTCA
          1 CCTAAAGATGGCC-AGAACTCTTCATCACGTATGAGCAGTGTCATCCCCCGACCAGATCTCCTCA

              *       *                      * *         ** *                
     519950 TCGCGTAGGAGCCGTGTCACCCTAGATAACCAGTCATCCTCATCAATTTGGAACCGTGTTATCGC
         65 TCACGTAGGATCCGTGTCACCCTAGATAACCAGACGTCCTCATCACGTAGGAACCGTGTTATCGC

                
     520015 CCTT
        130 CCTT

             *    *                             *   *                        
     520019 CTTAAAAATGGCCAGAACTCTTCATCACGTATGAGCCGTGGCATTCCCCCGACCAGATCTCCTCA
          1 CCTAAAGATGGCCAGAACTCTTCATCACGTATGAGCAGTGTCA-TCCCCCGACCAGATCTCCTCA

                      *    *                                                 
     520084 TCACGTAGGAACCGTATCACCCTAGATAACCAGACGTCCTCATCACGTAGGAACCGTGTTATCGC
         65 TCACGTAGGATCCGTGTCACCCTAGATAACCAGACGTCCTCATCACGTAGGAACCGTGTTATCGC

                
     520149 CCTT
        130 CCTT

              *                       *         **                           
     520153 CCAAAAGATGGCCAGAACTCTTCATCGCGTATGAGCCTTGTCATCCCCCGACCAGATCTCCTCAT
          1 CCTAAAGATGGCCAGAACTCTTCATCACGTATGAGCAGTGTCATCCCCCGACCAGATCTCCTCAT

             *     *                          *          *           *      *
     520218 CGCGTAGAAGT-CGTGTCACCCCTAGATAACCAGTCGTCCTCATCGCGTAGGAACCGAGTTATCA
         66 CACGTAGGA-TCCGTGTCA-CCCTAGATAACCAGACGTCCTCATCACGTAGGAACCGTGTTATCG

                 
     520282 CCCTT
        129 CCCTT

                                               *           *    *    *    *  
     520287 CCTAAAGATGGCCAGAACTCTTCATCACGTATGAGAAGTGTCATCCCTCGACTAGATATCCTTAT
          1 CCTAAAGATGGCCAGAACTCTTCATCACGTATGAGCAGTGTCATCCCCCGACCAGATCTCCTCAT

              *                
     520352 CATGTAGGATCCGTGTCAC
         66 CACGTAGGATCCGTGTCAC

     520371 TCTTAGACGA


Statistics
Matches: 307,  Mismatches: 41, Indels: 9
        0.86            0.11        0.03

Matches are distributed among these distances:
 133   64  0.21
 134  243  0.79

ACGTcount: A:0.26, C:0.31, G:0.19, T:0.25


Consensus pattern (133 bp):   
CCTAAAGATGGCCAGAACTCTTCATCACGTATGAGCAGTGTCATCCCCCGACCAGATCTCCTCAT
CACGTAGGATCCGTGTCACCCTAGATAACCAGACGTCCTCATCACGTAGGAACCGTGTTATCGCC
CTT

Done.