genome.fa.s3852.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003852.1 Hibiscus syriacus cultivar Beakdansim tig00008270_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155662

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459--1082	109	5.9	108	83	5	555	22	19	25	32	1.97
1440--1894	73	6.8	65	72	13	241	38	11	20	29	1.88
1564--1914	36	10.1	36	74	13	299	39	13	19	27	1.89
1580--1671	37	2.5	36	87	1	121	41	16	20	21	1.90
1604--1787	101	1.8	101	88	2	280	40	13	17	28	1.88
1521--1916	137	2.9	134	84	5	492	39	13	19	27	1.89
1698--1914	73	3.1	73	76	17	267	38	12	20	27	1.89
2392--2427	18	2.0	18	88	0	54	41	30	8	19	1.81
2855--2898	22	2.0	22	91	8	72	27	11	22	38	1.88
3454--3517	16	3.7	17	74	15	51	1	15	6	76	1.06
3478--3521	18	2.4	18	85	7	54	0	15	6	77	0.97
3486--3521	16	2.2	16	90	5	54	0	16	5	77	0.94
4623--4661	8	5.0	8	84	6	53	58	12	17	10	1.61
4623--4661	15	2.5	15	87	4	51	58	12	17	10	1.61
7081--7110	15	2.0	15	100	0	60	60	0	20	20	1.37
7084--7118	15	2.3	15	90	0	52	65	0	17	17	1.27
7203--7308	13	8.8	12	74	13	76	77	0	5	16	1.01
7214--7265	21	2.5	21	81	6	61	78	1	7	11	1.02
7203--7300	14	6.7	14	73	20	69	78	1	5	15	0.97
7202--7301	9	10.8	9	69	16	53	78	1	5	16	0.99
7701--7801	36	2.8	37	86	6	134	30	15	14	38	1.88
14440--14557	55	2.1	55	85	3	166	38	22	12	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14457--14591	55	2.5	55	82	4	148	39	21	14	25	1.91
14318--14840	290	1.8	290	88	5	806	34	22	16	26	1.95
14728--14959	55	4.2	55	87	1	304	37	22	11	28	1.89
15334--15369	3	12.0	3	100	0	72	33	0	0	66	0.92
16720--16797	31	2.5	31	87	0	111	37	14	25	23	1.92
19384--19443	31	1.9	31	82	0	75	28	25	8	38	1.84
19706--19745	2	20.5	2	94	5	73	50	0	0	50	1.00
27451--27491	20	2.0	20	85	0	55	63	7	0	29	1.21
28489--28831	174	2.0	174	92	0	569	25	22	15	36	1.94
33544--33579	19	1.9	19	94	5	65	27	0	0	72	0.85
36361--36495	20	6.7	20	78	10	114	33	25	17	23	1.96
36358--36489	61	2.2	61	86	2	176	35	25	16	22	1.95
36663--36706	22	2.0	22	95	0	79	20	45	15	18	1.85
36948--37011	20	3.2	20	81	0	74	17	18	20	43	1.88
38326--38370	18	2.5	18	88	0	72	26	44	15	13	1.83
38852--38918	20	3.4	20	81	2	73	38	23	22	14	1.92
38966--39055	14	5.8	14	74	21	81	11	17	23	47	1.79
38961--39072	33	3.4	33	96	1	199	11	18	23	46	1.82
39057--39112	20	2.8	19	86	7	76	16	25	23	35	1.94
39477--39563	40	2.1	40	85	4	120	21	42	14	20	1.88
40973--40998	13	2.0	13	100	0	52	46	0	15	38	1.46
41144--41193	14	3.0	17	75	24	61	48	18	22	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41220--41288	20	3.4	20	76	9	77	13	23	24	39	1.90
42642--42678	12	3.1	12	100	0	74	72	0	27	0	0.84
44325--44437	33	3.1	37	77	15	126	45	19	23	12	1.84
44325--44437	19	6.1	19	78	13	119	45	19	23	12	1.84
44433--44477	19	2.4	19	88	0	63	11	15	24	48	1.77
45034--45121	20	4.4	20	77	8	81	22	19	21	36	1.95
45111--45183	21	3.5	21	81	3	85	36	19	21	21	1.95
45196--45285	20	4.4	21	78	9	96	23	22	17	36	1.95
45049--45285	20	11.6	21	71	13	88	27	20	19	32	1.97
45049--45285	41	5.8	40	77	7	149	27	20	19	32	1.97
45275--45327	21	2.5	22	75	6	65	35	18	24	20	1.95
46251--46309	25	2.3	27	82	11	86	25	22	11	40	1.88
46258--46317	25	2.4	25	85	0	93	20	21	15	43	1.88
79377--79428	26	2.0	27	92	3	88	19	0	28	51	1.47
79856--79896	13	3.1	13	89	3	64	7	39	31	21	1.81
80361--80390	14	2.2	13	94	5	51	36	0	0	63	0.95
81803--81840	19	2.0	20	89	5	60	31	7	2	57	1.41
82684--82752	31	2.2	30	80	12	77	49	5	7	37	1.55
85806--86053	84	2.9	84	84	2	273	22	20	24	32	1.98
86052--86156	36	2.9	35	90	4	149	37	14	20	27	1.92
86281--86956	106	6.6	106	92	4	1026	23	17	25	33	1.96
86460--86709	43	5.4	43	68	14	176	21	17	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86503--86666	51	3.4	51	71	13	182	23	17	25	34	1.96
86424--86926	94	5.1	94	92	5	727	23	17	25	34	1.96
92170--92209	3	13.0	3	84	5	53	62	0	0	37	0.95
92148--92199	12	4.0	13	77	22	56	67	0	1	30	1.02
96585--96631	21	2.2	21	96	0	85	21	10	25	42	1.85
97199--97262	30	2.1	30	97	0	119	26	15	10	46	1.79
97203--97251	15	3.3	15	72	11	55	24	18	12	44	1.84
98160--98216	30	1.9	30	100	0	114	31	24	21	22	1.98
98220--98338	31	3.8	31	73	9	89	30	20	18	31	1.96
102975--103100	31	4.0	31	77	8	130	31	19	17	30	1.95
103876--103998	64	1.9	64	82	9	153	26	17	20	34	1.95
106576--106623	23	2.0	25	84	8	64	50	2	14	33	1.55
122604--122680	3	25.7	3	100	0	154	66	0	0	33	0.92
130105--130194	43	2.1	43	91	0	144	31	8	25	34	1.87
130290--130336	20	2.4	19	83	13	60	12	8	12	65	1.46
130952--130988	19	1.9	19	88	0	56	54	5	29	10	1.57
135006--135081	31	2.4	31	74	12	82	28	17	21	32	1.95
135060--135137	41	1.9	41	82	10	97	34	12	23	29	1.92
136943--137043	43	2.4	42	78	15	104	34	31	14	18	1.92
136980--137204	97	2.3	96	83	3	272	34	25	14	25	1.94
137077--137618	137	4.0	137	88	1	757	35	25	14	24	1.94
136909--137343	234	1.9	233	83	4	545	35	25	14	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138810--139034	118	1.9	119	81	8	271	36	5	6	51	1.50
148399--148436	18	2.1	19	95	5	69	21	50	23	5	1.69
148398--148464	22	3.2	22	83	10	79	19	44	22	13	1.85

Tables:   1

The End!