Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003853.1 Hibiscus syriacus cultivar Beakdansim tig00008276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 216820
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:275 original size:103 final size:99
Alignment explanation
Indices: 93--305 Score: 347
Period size: 103 Copynumber: 2.1 Consensus size: 99
83 GTTGAGGGTC
*
93 TATGTGGTCCTTCGGGACATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGCGACACATACTT
1 TATGTGGTCCTTCGGGACATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATACTT
* * *
158 GATCCTTGGTATATGTATATGATTCTTAATGAATGA
66 GATCATTGGCATATGTATATGATTCTTAAGGAA--A
194 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGAC--ATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
259 TTGATCATTGGCATATGTATATGATTCTTAAGGAAA
64 TTGATCATTGGCATATGTATATGATTCTTAAGGAAA
295 -ATGTGGTCCTT
1 TATGTGGTCCTT
306 ATGGACATTA
Statistics
Matches: 106, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
100 11 0.10
101 19 0.18
103 76 0.72
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (99 bp):
TATGTGGTCCTTCGGGACATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATACTT
GATCATTGGCATATGTATATGATTCTTAAGGAAA
Found at i:353 original size:23 final size:23
Alignment explanation
Indices: 320--382 Score: 92
Period size: 23 Copynumber: 2.7 Consensus size: 23
310 ACATTATTAT
320 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
343 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
366 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
383 ATATGAGCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 35 0.97
24 1 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:6471 original size:21 final size:21
Alignment explanation
Indices: 6429--6471 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
6419 TTTTTGGGCT
* *
6429 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
6450 AGGGGAATCGAT-CCCACCTCA
1 AGGGGAATCGATACCCA-CTCA
6471 A
1 A
6472 ACGAATATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:6524 original size:20 final size:20
Alignment explanation
Indices: 6499--6537 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6489 GAATGCTAAA
*
6499 GGGGAATCGATACCCCCCAG
1 GGGGAACCGATACCCCCCAG
*
6519 GGGGAACCGATTCCCCCCA
1 GGGGAACCGATACCCCCCA
6538 AAAAAAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.38, G:0.28, T:0.10
Consensus pattern (20 bp):
GGGGAACCGATACCCCCCAG
Found at i:7191 original size:103 final size:103
Alignment explanation
Indices: 7007--7232 Score: 377
Period size: 103 Copynumber: 2.2 Consensus size: 103
6997 ATAGAGGGTC
*
7007 TATGTGGTCCTTTGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTTGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGAAACATAC
*
7072 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
7110 TATGTGGT-CTTTCGGGACATATATGTATTCTTTGGAACATGTGT-ATGGTCTGGTGAGAAACAT
1 TATGTGGTCCTTT-GGGACATATATGTATTCTTTGGAACATGTGTGA-GGTCTGGTGAGAAACAT
7173 ACTTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
64 ACTTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
*
7213 TATGTGTTCCTTAT-GGACAT
1 TATGTGGTCCTT-TGGGACAT
7233 TATTATATGG
Statistics
Matches: 116, Mismatches: 3, Indels: 8
0.91 0.02 0.06
Matches are distributed among these distances:
102 5 0.04
103 107 0.92
104 3 0.03
105 1 0.01
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTTGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGAAACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:7274 original size:23 final size:23
Alignment explanation
Indices: 7241--7303 Score: 92
Period size: 23 Copynumber: 2.7 Consensus size: 23
7231 ATTATTATAT
7241 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
7264 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
7287 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
7304 ATATGAGCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 35 0.97
24 1 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:17051 original size:27 final size:28
Alignment explanation
Indices: 16999--17052 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
16989 ATTAAATAGC
*
16999 TCATAATATATTTTATAGAATAAAAATA
1 TCATAATATATTTTATAGAAGAAAAATA
*
17027 TCATAAT-TATTTT-TATAAGAGAAAAT
1 TCATAATATATTTTATAGAAGA-AAAAT
17053 GTGTCATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 5 0.22
27 11 0.48
28 7 0.30
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.41
Consensus pattern (28 bp):
TCATAATATATTTTATAGAAGAAAAATA
Found at i:21582 original size:22 final size:22
Alignment explanation
Indices: 21554--21599 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
21544 TCAGAAATGC
*
21554 TCGAAACCGAAACTATTCCCTT
1 TCGAAACCGAAACTAATCCCTT
21576 TCGAAACCGAAACTAATCCCTT
1 TCGAAACCGAAACTAATCCCTT
21598 TC
1 TC
21600 TCCCAATTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.33, G:0.09, T:0.26
Consensus pattern (22 bp):
TCGAAACCGAAACTAATCCCTT
Found at i:21834 original size:25 final size:24
Alignment explanation
Indices: 21790--21839 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
21780 TTATGGAAAC
*
21790 ATTAGTCAAACAAGACCACATCAAT
1 ATTAGTCAAACAAGAACACAT-AAT
21815 ATTAGTCAAACTAA-AACACATAAT
1 ATTAGTCAAAC-AAGAACACATAAT
21839 A
1 A
21840 AGGACAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 4 0.17
25 17 0.74
26 2 0.09
ACGTcount: A:0.52, C:0.20, G:0.06, T:0.22
Consensus pattern (24 bp):
ATTAGTCAAACAAGAACACATAAT
Found at i:24259 original size:21 final size:20
Alignment explanation
Indices: 24235--24352 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 20
24225 CAGTTCCCAG
24235 AATCGCAACGCGATTATGAA
1 AATCGCAACGCGATTATGAA
* *
24255 GAATCACAATGCGA-TA-GTACA
1 -AATCGCAACGCGATTATG-A-A
** * * *
24276 AATTCGCATTGCGATTTTTCAG
1 AA-TCGCAACGCGA-TTATGAA
*
24298 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGATTATGAA
* **
24318 AATCACAACGCGAACAT-ATA
1 AATCGCAACGCGATTATGA-A
24338 AATCGCAACGCGATT
1 AATCGCAACGCGATT
24353 CTGATTATCG
Statistics
Matches: 72, Mismatches: 18, Indels: 15
0.69 0.17 0.14
Matches are distributed among these distances:
19 2 0.03
20 36 0.50
21 30 0.42
22 2 0.03
23 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (20 bp):
AATCGCAACGCGATTATGAA
Found at i:24326 original size:20 final size:20
Alignment explanation
Indices: 24298--24350 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
24288 GATTTTTCAG
*
24298 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACAT-ATA
*
24318 AATCACAACGCGAACATATA
1 AATCGCAACGCGAACATATA
24338 AATCGCAACGCGA
1 AATCGCAACGCGA
24351 TTCTGATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.45, C:0.25, G:0.17, T:0.13
Consensus pattern (20 bp):
AATCGCAACGCGAACATATA
Found at i:24406 original size:20 final size:20
Alignment explanation
Indices: 24378--24613 Score: 255
Period size: 20 Copynumber: 11.7 Consensus size: 20
24368 AGTATCCGTA
* * *
24378 AAATTGCAACGCGTATCCGT
1 AAATCGCAACGCGAATACGT
24398 AAATCGCAACGAC-AATACGT
1 AAATCGCAACG-CGAATACGT
* *
24418 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGAATACGT
* *
24439 AAATCGCAACGAGAATACAT
1 AAATCGCAACGCGAATACGT
*
24459 AAATCGCAACGAGAATACGT
1 AAATCGCAACGCGAATACGT
*
24479 AAATCGCAACGAGAATACGT
1 AAATCGCAACGCGAATACGT
24499 AAATCGCAACGC--ATATCTGT
1 AAATCGCAACGCGAATA-C-GT
*
24519 AAATCGCAACGAGAATACGT
1 AAATCGCAACGCGAATACGT
* * *
24539 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGAATACGT
24559 AAATCGCAACGAC-AATACGT
1 AAATCGCAACG-CGAATACGT
* *
24579 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGAATACGT
24600 AAATCGCAACGCGA
1 AAATCGCAACGCGA
24614 TTTTTAAAGC
Statistics
Matches: 184, Mismatches: 22, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
18 3 0.02
19 1 0.01
20 142 0.77
21 35 0.19
22 3 0.02
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.18
Consensus pattern (20 bp):
AAATCGCAACGCGAATACGT
Found at i:24480 original size:40 final size:40
Alignment explanation
Indices: 24359--24610 Score: 360
Period size: 40 Copynumber: 6.2 Consensus size: 40
24349 GATTCTGATT
* * * *
24359 ATCGTAACGAGTATCCGTAAAATTGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGT-AAATCGCAACGCGTATCCGTAA
*
24400 ATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGT-AAATCGCAACGCGTATCCGTAA
* * * *
24441 ATCGCAACGAGAATACATAAATCGCAACGAGAATACGTAA
1 ATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAA
* *
24481 ATCGCAACGAGAATACGTAAATCGCAACGCATATCTGTAA
1 ATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAA
*
24521 ATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAA
*
24561 ATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGT-AAATCGCAACGCGTATCCGTAA
24602 ATCGCAACG
1 ATCGCAACG
24611 CGATTTTTAA
Statistics
Matches: 189, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 107 0.57
41 82 0.43
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.19
Consensus pattern (40 bp):
ATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAA
Found at i:25219 original size:21 final size:21
Alignment explanation
Indices: 25158--25236 Score: 94
Period size: 20 Copynumber: 3.9 Consensus size: 21
25148 TTCTAAACTT
25158 AAAATCGCAAC-ATGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
25178 AAAATCGCAAC-ACGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
**
25198 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAACGAGAGAAATG
25219 AAAATCGCAACGAGAGAA
1 AAAATCGCAACGAGAGAA
25237 TCGCAACGCG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
20 30 0.58
21 22 0.42
ACGTcount: A:0.52, C:0.18, G:0.19, T:0.11
Consensus pattern (21 bp):
AAAATCGCAACGAGAGAAATG
Found at i:25240 original size:14 final size:14
Alignment explanation
Indices: 25218--25282 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 14
25208 CGAGAGAAAT
25218 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
25232 GAGAATCGCAACGCGAAA
1 GAAAATCGCAA--CG--A
25250 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
* *
25265 GATAATCGCAACGC
1 GAAAATCGCAACGA
25279 GAAA
1 GAAA
25283 CCAAAATCGC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
14 25 0.61
15 1 0.02
16 2 0.05
17 2 0.05
18 1 0.02
19 10 0.24
ACGTcount: A:0.46, C:0.22, G:0.23, T:0.09
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:25254 original size:33 final size:33
Alignment explanation
Indices: 25213--25293 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
25203 CGCAACGAGA
25213 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
25246 GAAATGAAAATCGCAACGAGATAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
25279 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
25294 TTGCGATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:25368 original size:20 final size:20
Alignment explanation
Indices: 25318--25373 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
25308 TCGTGTTGCG
* *
25318 ATTCTTTCGTTGCAATAGTC
1 ATTCTCTCGTTGCGATAGTC
*
25338 ATT-TCCGCGTTGCGATAGTC
1 ATTCT-CTCGTTGCGATAGTC
25358 ATTCTCTCGTTGCGAT
1 ATTCTCTCGTTGCGAT
25374 TTTTATTTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.41
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATAGTC
Found at i:27216 original size:94 final size:94
Alignment explanation
Indices: 27055--27434 Score: 665
Period size: 94 Copynumber: 4.1 Consensus size: 94
27045 TAGATTGCTT
* * *
27055 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAATTGTTTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
27120 ATTTGTCTTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTC-TTTGTTTTGTCTTTTGGTTGAA
27149 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
27214 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
27243 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
27308 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* * *
27337 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTTTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
27402 ATTTTTCTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
27430 AGTAA
1 AGTAA
27435 TGCAATCCAT
Statistics
Matches: 278, Mismatches: 7, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
93 26 0.09
94 252 0.91
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.48
Consensus pattern (94 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:27579 original size:33 final size:33
Alignment explanation
Indices: 27537--27599 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
27527 AATACAAAAT
**
27537 GAATCGCAACGAGAAATGAAAATCGCAACGAGA
1 GAATCGCAACGAGAAACCAAAATCGCAACGAGA
*
27570 GAATCGCAACGCGAAACCAAAATCGCAACG
1 GAATCGCAACGAGAAACCAAAATCGCAACG
27600 CGAAACTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.46, C:0.24, G:0.22, T:0.08
Consensus pattern (33 bp):
GAATCGCAACGAGAAACCAAAATCGCAACGAGA
Found at i:27674 original size:20 final size:20
Alignment explanation
Indices: 27649--27715 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
27639 GATTCTCTCG
*
27649 TTGCGATAGTCAAATTCGTA
1 TTGCGATAGTCAAATTCGCA
**
27669 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCAAATTCGCA
** *
27689 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCA
27709 TTGCGAT
1 TTGCGAT
27716 TTTAAGTTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCA
Found at i:28290 original size:21 final size:21
Alignment explanation
Indices: 28199--28297 Score: 92
Period size: 21 Copynumber: 4.7 Consensus size: 21
28189 GACTCACCTG
*
28199 TCATCGTTCAAGAGGCCTCCCC
1 TCATCGTTCAAGAGGCC-CCTC
*
28221 T-ATCGTTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGGCCCCTC
** *
28241 TCATCCCTCAAGAGTCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
* * * *
28262 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCCCCTC
*
28283 TCATCGTTGAAGAGG
1 TCATCGTTCAAGAGG
28298 TCTCTCCCAA
Statistics
Matches: 60, Mismatches: 16, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 3 0.05
21 56 0.93
22 1 0.02
ACGTcount: A:0.22, C:0.35, G:0.20, T:0.22
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTC
Found at i:28296 original size:42 final size:42
Alignment explanation
Indices: 28196--28306 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
28186 CCCGACTCAC
* * *
28196 CTGTCATCGTTCAAGAGGCCTCCCCTATCGTTCAAGAGGCCC
1 CTGTCATCGTTCAAGAGGCCTCCCCCACCGTTCAAGAGGCCA
* ** *
28238 CTATCATCCCTCAAGAGTCC-CCTCCCACCGTTCAAGAGGCCA
1 CTGTCATCGTTCAAGAGGCCTCC-CCCACCGTTCAAGAGGCCA
* * *
28280 CTGTCATCGTTGAAGAGGTCTCTCCCA
1 CTGTCATCGTTCAAGAGGCCTCCCCCA
28307 ACATTCTAGA
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
41 2 0.04
42 50 0.94
43 1 0.02
ACGTcount: A:0.21, C:0.37, G:0.19, T:0.23
Consensus pattern (42 bp):
CTGTCATCGTTCAAGAGGCCTCCCCCACCGTTCAAGAGGCCA
Found at i:29682 original size:14 final size:14
Alignment explanation
Indices: 29663--29698 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
29653 ATTGTTTAAT
29663 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
29677 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
29691 TGATTTGT
1 TGATTTGT
29699 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:29857 original size:33 final size:34
Alignment explanation
Indices: 29800--29895 Score: 140
Period size: 33 Copynumber: 2.9 Consensus size: 34
29790 AAAACAGACT
* * **
29800 ATCGCAACGCGTAAATGACTATCGCAACGAGAGA
1 ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
*
29834 ATCGCAATGCG-AAATGAAAATCGCAACGAGTGA
1 ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
29867 ATCGCAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCGAAAATGAAAATCGCAACG
29896 CGAAACTAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
33 30 0.53
34 27 0.47
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.15
Consensus pattern (34 bp):
ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
Found at i:29891 original size:20 final size:19
Alignment explanation
Indices: 29833--29900 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
29823 GCAACGAGAG
29833 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
29852 AATCGCAA--CG-AGTG--
1 AATCGCAATGCGAAATGAA
29866 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
29886 AATCGCAACGCGAAA
1 AATCGCAATGCGAAA
29901 CTAATTTCGC
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
14 8 0.20
16 5 0.12
17 2 0.05
18 3 0.08
19 11 0.28
20 11 0.28
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:29926 original size:19 final size:19
Alignment explanation
Indices: 29904--30134 Score: 158
Period size: 19 Copynumber: 12.8 Consensus size: 19
29894 CGCGAAACTA
*
29904 ATTTCGCGTTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
29923 ATTTTCGCATTGCGA--TTC
1 A-TTTCGCATTGCGATTTTC
*
29941 A-CTCG--TTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
*
29957 ATTTCACATTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
29976 ATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
*
29995 ATTTCGCATTGTGA--TTC
1 ATTTCGCATTGCGATTTTC
* **
30012 -TCTCG--TTGCGATAGTC
1 ATTTCGCATTGCGATTTTC
* * *
30028 ATTTCCGCGTTCCGCA-TTGC
1 ATTT-CGCATTGCG-ATTTTC
* *
30048 GA--TAGTC-TTGTGATTTTC
1 -ATTTCG-CATTGCGATTTTC
30066 ATTTTCGCATTGCGA--TTC
1 A-TTTCGCATTGCGATTTTC
*
30084 A-CTCG--TTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
30100 ATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
30119 ATTTCGCATTGCGATT
1 ATTTCGCATTGCGATT
30135 CTCTCGTTGC
Statistics
Matches: 165, Mismatches: 22, Indels: 50
0.70 0.09 0.21
Matches are distributed among these distances:
14 17 0.10
16 20 0.12
17 12 0.07
18 17 0.10
19 73 0.44
20 24 0.15
21 2 0.01
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (19 bp):
ATTTCGCATTGCGATTTTC
Found at i:30165 original size:20 final size:20
Alignment explanation
Indices: 30140--30213 Score: 114
Period size: 20 Copynumber: 3.7 Consensus size: 20
30130 CGATTCTCTC
30140 GTTGCGATAGTCATTTCCGT
1 GTTGCGATAGTCATTTCCGT
*
30160 GTTGCGATAGTC-TATTCCGC
1 GTTGCGATAGTCAT-TTCCGT
*
30180 ATTGCGATAGTCATTTCCGT
1 GTTGCGATAGTCATTTCCGT
30200 GTTGCGATAGTCAT
1 GTTGCGATAGTCAT
30214 ATTCGCGTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (20 bp):
GTTGCGATAGTCATTTCCGT
Found at i:30196 original size:40 final size:41
Alignment explanation
Indices: 30141--30217 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 41
30131 GATTCTCTCG
30141 TTGCGATAGTCATTTCCGTGTTGCGATAGTC-TATTCCGCA
1 TTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTCCGCA
30181 TTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTC
1 TTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTC
30218 GCGTTGTGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
40 31 0.86
41 5 0.14
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.39
Consensus pattern (41 bp):
TTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTCCGCA
Found at i:30223 original size:20 final size:20
Alignment explanation
Indices: 30139--30223 Score: 111
Period size: 20 Copynumber: 4.2 Consensus size: 20
30129 GCGATTCTCT
30139 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
30159 TGTTGCGATAGTC-TATTCCG
1 CGTTGCGATAGTCAT-TTCCG
*
30179 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
30199 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
30219 CGTTG
1 CGTTG
30224 TGATTTCCGC
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.02
20 52 0.93
21 3 0.05
ACGTcount: A:0.16, C:0.21, G:0.25, T:0.38
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:33532 original size:20 final size:20
Alignment explanation
Indices: 33507--33570 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
33497 AAATTCAGTA
33507 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCTCG
*
33527 TTGCGAT--TTATGTAA--TCG
1 TTGCGATAGTCA-G-AATCTCG
* *
33545 ATGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCTCG
33565 TTGCGA
1 TTGCGA
33571 ATCTGGAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 12
0.66 0.10 0.24
Matches are distributed among these distances:
18 13 0.39
19 2 0.06
20 18 0.55
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCTCG
Found at i:33645 original size:20 final size:20
Alignment explanation
Indices: 33601--33833 Score: 231
Period size: 20 Copynumber: 11.6 Consensus size: 20
33591 TACTGGAGAT
*
33601 CGCGTTGCGAATTATC-GAT-
1 CGCGTTGCGATTTA-CGGATA
33620 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
33640 CGCGTTGCGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
* *
33660 TGTCGTTACGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
* * *
33681 CGCATTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
* *
33701 CTCGTTGCGATTTACAGATA
1 CGCGTTGCGATTTACGGATA
* *
33721 CGCGTTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
*
33741 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
33761 CGCGTTGCGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
*
33781 TGTCGTTGCGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
* *
33802 TGCGTTGCGATTTTACGCATA
1 CGCGTTGCGA-TTTACGGATA
*
33823 CTCGTTGCGAT
1 CGCGTTGCGAT
33834 AGTCAGAATC
Statistics
Matches: 176, Mismatches: 29, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
18 1 0.01
19 16 0.09
20 108 0.61
21 51 0.29
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:33828 original size:41 final size:41
Alignment explanation
Indices: 33622--33833 Score: 338
Period size: 41 Copynumber: 5.2 Consensus size: 41
33612 TTATCGATCG
*
33622 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
33663 CGTTACGATTTACGGATACGCATTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
*
33703 CGTTGCGATTTACAGATACGCGTTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
*
33743 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* * *
33784 CGTTGCGATTTACGGATATGCGTTGCGATTTTACGCATACT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
33825 CGTTGCGAT
1 CGTTGCGAT
33834 AGTCAGAATC
Statistics
Matches: 158, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 75 0.47
41 83 0.53
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (41 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
Found at i:33865 original size:20 final size:20
Alignment explanation
Indices: 33842--33894 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
33832 ATAGTCAGAA
*
33842 TCGCGTTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
*
33862 TCGCATTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
*
33882 TCACGTTGCGATT
1 TCGCGTTGCGATT
33895 CTGGAAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.43
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:33947 original size:21 final size:21
Alignment explanation
Indices: 33862--33959 Score: 60
Period size: 21 Copynumber: 4.7 Consensus size: 21
33852 ATTTATATGT
*
33862 TCGCATTGCGATT-TTCATAT
1 TCGCATTGCGATTCTTCATAA
* * ** *
33882 TCACGTTGCGATTCTGGAAAA
1 TCGCATTGCGATTCTTCATAA
*
33903 TCGCAATGCGAATT-TGT-ACT-A
1 TCGCATTGCG-ATTCT-TCA-TAA
33924 TCGCATTGCGATTCTTCATAA
1 TCGCATTGCGATTCTTCATAA
**
33945 TCGTGTTGCGATTCT
1 TCGCATTGCGATTCT
33960 GGGAACTGAT
Statistics
Matches: 57, Mismatches: 14, Indels: 13
0.68 0.17 0.15
Matches are distributed among these distances:
20 16 0.28
21 38 0.67
22 3 0.05
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTCTTCATAA
Found at i:42308 original size:2 final size:2
Alignment explanation
Indices: 42301--42336 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
42291 AAACTCAAGA
42301 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
42337 CAAATGTAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46799 original size:13 final size:13
Alignment explanation
Indices: 46781--46810 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
46771 TTATACAATT
*
46781 TATTATATATCTA
1 TATTATATATATA
46794 TATTATATATATA
1 TATTATATATATA
46807 TATT
1 TATT
46811 TATCAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (13 bp):
TATTATATATATA
Found at i:51034 original size:16 final size:16
Alignment explanation
Indices: 51013--51047 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
51003 AGGTAATATA
*
51013 ACAAATATTTCCAGCT
1 ACAAATATTTCAAGCT
51029 ACAAATATTTCAAGCT
1 ACAAATATTTCAAGCT
51045 ACA
1 ACA
51048 TAGACTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.29
Consensus pattern (16 bp):
ACAAATATTTCAAGCT
Found at i:60612 original size:2 final size:2
Alignment explanation
Indices: 60605--60633 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
60595 TTTAAAATAG
60605 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60634 TAAGAGTAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:71717 original size:15 final size:15
Alignment explanation
Indices: 71697--71743 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
71687 TGCAAAAAGT
*
71697 AATAAAAATTAATAC
1 AATAAAAATTAATAA
*
71712 AATAAAATTTAATAA
1 AATAAAAATTAATAA
*
71727 AATAATAAATTATTAA
1 AATAA-AAATTAATAA
71743 A
1 A
71744 TAATTATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
15 18 0.67
16 9 0.33
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (15 bp):
AATAAAAATTAATAA
Found at i:77397 original size:2 final size:2
Alignment explanation
Indices: 77390--77416 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
77380 TCAATCTATG
77390 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
77417 CTCACACACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86576 original size:21 final size:21
Alignment explanation
Indices: 86550--86606 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
86540 AGGGTGTCAA
*
86550 AGTGCATCCATGCACCCCTGT
1 AGTGCATCCATGCACCCCTGC
*
86571 AGTGCATCCATGCATCCCTGC
1 AGTGCATCCATGCACCCCTGC
*
86592 AATGCATCCATGCAC
1 AGTGCATCCATGCAC
86607 TTGCACTAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (21 bp):
AGTGCATCCATGCACCCCTGC
Found at i:86713 original size:21 final size:20
Alignment explanation
Indices: 86670--86724 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 20
86660 CATCCTTCTA
**
86670 TGCATCGATGCATCATTTTG
1 TGCATCGATGCATCAGGTTG
86690 TGCATCGATGCATCAAGGTTG
1 TGCATCGATGCATC-AGGTTG
*
86711 TGCATCCATGCATC
1 TGCATCGATGCATC
86725 CTGCTGTGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (20 bp):
TGCATCGATGCATCAGGTTG
Found at i:86734 original size:20 final size:20
Alignment explanation
Indices: 86649--86742 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
86639 AATGCAATTA
* * *
86649 GTGCATCGATACATCCTTCT
1 GTGCATCGATGCATCATGCT
* **
86669 ATGCATCGATGCATCATTTT
1 GTGCATCGATGCATCATGCT
* *
86689 GTGCATCGATGCATCAAGGTT
1 GTGCATCGATGCATC-ATGCT
* *
86710 GTGCATCCATGCATCCTGCT
1 GTGCATCGATGCATCATGCT
*
86730 GTGCATCCATGCA
1 GTGCATCGATGCA
86743 CGAAGGCTGC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
20 45 0.73
21 17 0.27
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (20 bp):
GTGCATCGATGCATCATGCT
Found at i:88810 original size:18 final size:19
Alignment explanation
Indices: 88774--88832 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
88764 TGATTTTTTA
88774 ATTTTATTAATAATTAATT
1 ATTTTATTAATAATTAATT
*
88793 ATTTTATTAAT-GTTAATT
1 ATTTTATTAATAATTAATT
** *
88811 AAGTCATTAATAATTAA-T
1 ATTTTATTAATAATTAATT
88829 ATTT
1 ATTT
88833 AAGACGGTGT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
18 17 0.53
19 15 0.47
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (19 bp):
ATTTTATTAATAATTAATT
Found at i:88935 original size:21 final size:20
Alignment explanation
Indices: 88897--88935 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
88887 GTTACTTATA
**
88897 TATTTTATCAATTTAATTTT
1 TATTTTATCAATAAAATTTT
88917 TATTTTATTCAATAAAATT
1 TATTTTA-TCAATAAAATT
88936 AATCTTCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
TATTTTATCAATAAAATTTT
Found at i:88985 original size:16 final size:16
Alignment explanation
Indices: 88957--88995 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
88947 CAAATTATGG
88957 CACGTGTCACTAGTAA
1 CACGTGTCACTAGTAA
* *
88973 CAGGTGTCGCTAGTAA
1 CACGTGTCACTAGTAA
88989 CACGTGT
1 CACGTGT
88996 GAAGGAACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (16 bp):
CACGTGTCACTAGTAA
Found at i:89075 original size:29 final size:29
Alignment explanation
Indices: 89041--89109 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
89031 AAACATACAC
89041 TCAATTATTGATCCAAAATCATTATATGA
1 TCAATTATTGATCCAAAATCATTATATGA
89070 TCAATTATTGATCCAAAATCATTATATGA
1 TCAATTATTGATCCAAAATCATTATATGA
*
89099 TCAATAATTGA
1 TCAATTATTGA
89110 CAATATATGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (29 bp):
TCAATTATTGATCCAAAATCATTATATGA
Found at i:92164 original size:2 final size:2
Alignment explanation
Indices: 92157--92212 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
92147 GAGCACTTTA
92157 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92199 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
92213 TTTGGTTGTC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102013 original size:29 final size:29
Alignment explanation
Indices: 101975--102135 Score: 250
Period size: 29 Copynumber: 5.6 Consensus size: 29
101965 CACAGTCAAA
**
101975 AATTACCAAAATATCATTGTTTTAAAAAT
1 AATTACCAAAATATCACCGTTTTAAAAAT
**
102004 AATTACCAAAATATCATTGTTTTAAAAAT
1 AATTACCAAAATATCACCGTTTTAAAAAT
*
102033 AATTACCAAAATATCACCGATTTAAAAAT
1 AATTACCAAAATATCACCGTTTTAAAAAT
102062 AATTACCAAAATATCACCGTTTTAAAAAT
1 AATTACCAAAATATCACCGTTTTAAAAAT
* *
102091 AATTACCAAAATATCACCATTTTAAAAAA
1 AATTACCAAAATATCACCGTTTTAAAAAT
*
102120 AATTCCCAAAATATCA
1 AATTACCAAAATATCA
102136 TCGGGTCGGT
Statistics
Matches: 125, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 125 1.00
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (29 bp):
AATTACCAAAATATCACCGTTTTAAAAAT
Found at i:108264 original size:29 final size:29
Alignment explanation
Indices: 108226--108412 Score: 231
Period size: 29 Copynumber: 6.6 Consensus size: 29
108216 CACAGTCAAA
*
108226 AATTA-CAAAATATCACTTTTTTAAAAAT
1 AATTACCAAAATATCACTGTTTTAAAAAT
* * *
108254 AATTATCAAAATATCATTGTTTTAAAAAA
1 AATTACCAAAATATCACTGTTTTAAAAAT
108283 AATTACCAAAATATCACTGTTTT-AAAAT
1 AATTACCAAAATATCACTGTTTTAAAAAT
* **
108311 AATTACAAAAATATCACTAATTTAAAAAT
1 AATTACCAAAATATCACTGTTTTAAAAAT
* *
108340 AATTACCAAAATATCACCGATTTAAAAAT
1 AATTACCAAAATATCACTGTTTTAAAAAT
* *
108369 ATTTACCAAAATATCACCGTTTTAAAAA-
1 AATTACCAAAATATCACTGTTTTAAAAAT
108397 AA-T-CTCAAAATATCAC
1 AATTAC-CAAAATATCAC
108413 CGGGTTGGTC
Statistics
Matches: 141, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 12 0.09
28 30 0.21
29 98 0.70
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (29 bp):
AATTACCAAAATATCACTGTTTTAAAAAT
Found at i:108314 original size:57 final size:56
Alignment explanation
Indices: 108223--108398 Score: 219
Period size: 57 Copynumber: 3.1 Consensus size: 56
108213 GTCCACAGTC
* *
108223 AAAAATTA-CAAAATATCACTTTTTTAAAAATAATTATCAAAATATCATTGTTTTAAA
1 AAAAATTACCAAAATATCACTGTTTT-AAAATAATTA-CAAAATATCACTGTTTTAAA
**
108280 AAAAATTACCAAAATATCACTGTTTTAAAATAATTACAAAAATATCACTAATTTAAA
1 AAAAATTACCAAAATATCACTGTTTTAAAATAATTAC-AAAATATCACTGTTTTAAA
* * * * *
108337 AATAATTACCAAAATATCACCGATTTAAAAATATTTACCAAAATATCACCGTTTTAAA
1 AAAAATTACCAAAATATCACTG-TTTTAAAATAATTA-CAAAATATCACTGTTTTAAA
108395 AAAA
1 AAAA
108399 TCTCAAAATA
Statistics
Matches: 103, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
56 1 0.01
57 54 0.52
58 47 0.46
59 1 0.01
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.33
Consensus pattern (56 bp):
AAAAATTACCAAAATATCACTGTTTTAAAATAATTACAAAATATCACTGTTTTAAA
Found at i:108375 original size:86 final size:85
Alignment explanation
Indices: 108223--108412 Score: 265
Period size: 86 Copynumber: 2.2 Consensus size: 85
108213 GTCCACAGTC
** * ** *
108223 AAAAATTACAAAATATCACTTTTTTAAAAATAATTATCAAAATATCATTGTTTTAAAAAAAATTA
1 AAAAATTACAAAATATCACTAATTTAAAAATAATTACCAAAATATCACCGATTTAAAAAAAATTA
*
108288 CCAAAATATCACTGTTTTAA
66 CCAAAATATCACCGTTTTAA
* * *
108308 AATAATTACAAAAATATCACTAATTTAAAAATAATTACCAAAATATCACCGATTTAAAAATATTT
1 AAAAATTAC-AAAATATCACTAATTTAAAAATAATTACCAAAATATCACCGATTTAAAAAAAATT
108373 ACCAAAATATCACCGTTTTAA
65 ACCAAAATATCACCGTTTTAA
108394 AAAAATCT-CAAAATATCAC
1 AAAAAT-TACAAAATATCAC
108413 CGGGTTGGTC
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
85 18 0.20
86 73 0.79
87 1 0.01
ACGTcount: A:0.52, C:0.14, G:0.02, T:0.33
Consensus pattern (85 bp):
AAAAATTACAAAATATCACTAATTTAAAAATAATTACCAAAATATCACCGATTTAAAAAAAATTA
CCAAAATATCACCGTTTTAA
Found at i:110748 original size:77 final size:79
Alignment explanation
Indices: 110653--110809 Score: 284
Period size: 79 Copynumber: 2.0 Consensus size: 79
110643 GCTAGATCGG
110653 TACTTTATAATTACCTCTAATTCAAGAG-TTGAAAGAA-TATAAAGTAA-TTAGATACCGTATAA
1 TACTTTATAATTACCTCTAATTCAAGAGTTTGAAAGAATTAT-AAGTAATTTAGATACCGTATAA
110715 AAATATGTGCGTTAT
65 AAATATGTGCGTTAT
110730 TACTTTATAATTACCTCTAATTCAAGAGTTTGAAAGAATTATAAGTAATTTAGATACCGTATAAA
1 TACTTTATAATTACCTCTAATTCAAGAGTTTGAAAGAATTATAAGTAATTTAGATACCGTATAAA
110795 AATATGTGCGTTAT
66 AATATGTGCGTTAT
110809 T
1 T
110810 TAAAATTTTA
Statistics
Matches: 77, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
77 28 0.36
78 15 0.19
79 34 0.44
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (79 bp):
TACTTTATAATTACCTCTAATTCAAGAGTTTGAAAGAATTATAAGTAATTTAGATACCGTATAAA
AATATGTGCGTTAT
Found at i:112038 original size:13 final size:13
Alignment explanation
Indices: 112020--112050 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
112010 AAATTAGCGG
*
112020 TTTTTTTCCGGTT
1 TTTTTTTCCAGTT
112033 TTTTTTTCCAGTT
1 TTTTTTTCCAGTT
112046 TTTTT
1 TTTTT
112051 CGGTTTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.03, C:0.13, G:0.10, T:0.74
Consensus pattern (13 bp):
TTTTTTTCCAGTT
Found at i:119667 original size:19 final size:20
Alignment explanation
Indices: 119628--119669 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
119618 TGAAACAAAC
119628 AAAAGGAGAATAGAAAGATA
1 AAAAGGAGAATAGAAAGATA
119648 AAAATGGAGAATA-AAA-ATA
1 AAAA-GGAGAATAGAAAGATA
119667 AAA
1 AAA
119670 GAAATTAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 7 0.33
21 8 0.38
ACGTcount: A:0.69, C:0.00, G:0.19, T:0.12
Consensus pattern (20 bp):
AAAAGGAGAATAGAAAGATA
Found at i:120693 original size:10 final size:10
Alignment explanation
Indices: 120678--120707 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
120668 CTAACACTGG
120678 TGTGTAATCC
1 TGTGTAATCC
120688 TGTGTAATCC
1 TGTGTAATCC
120698 TGTGTAATCC
1 TGTGTAATCC
120708 GCCCCCTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (10 bp):
TGTGTAATCC
Found at i:121048 original size:21 final size:21
Alignment explanation
Indices: 120999--121048 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
120989 GTACCATTTA
* *
120999 AATAATAAAATTAGTAATTAT
1 AATAATATAATTAGTAAATAT
121020 -ATATATATAATT-GTATAATAT
1 AATA-ATATAATTAGTA-AATAT
121041 AATAATAT
1 AATAATAT
121049 TAATACAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
20 6 0.25
21 15 0.62
22 3 0.12
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (21 bp):
AATAATATAATTAGTAAATAT
Found at i:121731 original size:107 final size:105
Alignment explanation
Indices: 121509--121731 Score: 293
Period size: 105 Copynumber: 2.1 Consensus size: 105
121499 CCAATGCAAG
* *
121509 TTGCGTTGTTTCGAGGCCAATATCCTTCGCTGTGAACTTGAAATTGACTCTGAAACTGAAAAGCG
1 TTGCGCTGTCTCGAGGCCAATATCCTTCGCTGTGAACTTGAAATTGACTCTGAAACTGAAAAGCG
*
121574 TTTGTTGACAACCAGTGGCCCCTTCGTTGTGAAGTTGAAC
66 TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAAC
* * * * * **
121614 TTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGGAAGT
1 TTGCGCTGTCTCGAGGCCAATATCCTTCGCTGTGAACTTGAAATTGACTCTGAAACT-GAAAAG-
** **
121679 TTTTTGTTGACAGTCAGCGGCCCCTTCGTTGTGAAGTTGAAC
64 CGTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAAC
*
121721 TTGTGCTGTCT
1 TTGCGCTGTCT
121732 TAAACTGGGA
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
105 52 0.51
106 4 0.04
107 46 0.45
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.34
Consensus pattern (105 bp):
TTGCGCTGTCTCGAGGCCAATATCCTTCGCTGTGAACTTGAAATTGACTCTGAAACTGAAAAGCG
TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAAC
Found at i:121845 original size:64 final size:64
Alignment explanation
Indices: 121680--122056 Score: 601
Period size: 64 Copynumber: 5.8 Consensus size: 64
121670 TGGGGAAGTT
** * *
121680 TTTTGTTGACAGTCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGCTGTCTTAAACTGGGAAA
1 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGGAAA
* * *
121744 TTTTTGTTGACAACCAACGGCCCCTTCGTTGTAAAGTTGAACTTGTGTTGTCTGACACTGGGAAA
1 -TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGGAAA
* *
121809 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGATACTGGAAAAA
1 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGG----G
121874 AAA
62 AAA
* * *
121877 TTTTGTCGACAACCAGTGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGACACTGGGAAA
1 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGGAAA
121941 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGGAAA
1 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGGAAA
122005 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
1 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
122057 TGAGTGGCAC
Statistics
Matches: 290, Mismatches: 18, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
64 173 0.60
65 57 0.20
68 60 0.21
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (64 bp):
TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGGAAA
Found at i:121929 original size:132 final size:128
Alignment explanation
Indices: 121680--122056 Score: 610
Period size: 132 Copynumber: 2.9 Consensus size: 128
121670 TGGGGAAGTT
** * * *
121680 TTTTGTTGACAGTCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGCTGTCTTAAACTGGGAAAT
1 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACT-GGAAAA
* *
121745 TTTTGTTGACAACCAACGGCCCCTTCGTTGTAAAGTTGAACTTGTGTTGTCTGACACTGGGAAA
65 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGACACTGGGAAA
*
121809 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGATACTGGAAAAA
1 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGG----A
* *
121874 AAATTTTGTCGACAACCAGTGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGACACTGGGA
62 AAATTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGACACTGGGA
121939 AA
127 AA
*
121941 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGGAAAT
1 TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGAAAAT
122006 TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
66 TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
122057 TGAGTGGCAC
Statistics
Matches: 230, Mismatches: 14, Indels: 9
0.91 0.06 0.04
Matches are distributed among these distances:
128 55 0.24
129 53 0.23
132 122 0.53
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (128 bp):
TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGAAAAT
TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGACACTGGGAAA
Found at i:122032 original size:196 final size:197
Alignment explanation
Indices: 121697--122056 Score: 659
Period size: 196 Copynumber: 1.8 Consensus size: 197
121687 GACAGTCAGC
*
121697 GGCCCCTTCGTTGTGAAGTTGAACTTGTGCTGTCTTAAACTGGGAAATTTTTGTTGACAACCAAC
1 GGCCCCTTCGTTGTGAAGTTGAACTTGTGCTGTCTGAAACTGGGAAATTTTTGTTGACAACCAAC
*
121762 GGCCCCTTCGTTGTAAAGTTGAACTTGTGTTGTCTGACACTGGGAAATTTTGTTGACAACCAGCG
66 GGCCCCTTCGTTGTAAAGTTGAACTTGTGTTGTCTGAAACTGGGAAATTTTGTTGACAACCAGCG
121827 GCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGATACTGGAAAAAAAATTTTGTCGACAACCA
131 GCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGATACTGGAAAAAAAATTTTGTCGACAACCA
121892 GT
196 GT
* * *
121894 GGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGACACTGGGAAA-TTTTGTTGACAACCAGC
1 GGCCCCTTCGTTGTGAAGTTGAACTTGTGCTGTCTGAAACTGGGAAATTTTTGTTGACAACCAAC
*
121958 GGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGGAAATTTTGTTGACAACCAGCG
66 GGCCCCTTCGTTGTAAAGTTGAACTTGTGTTGTCTGAAACTGGGAAATTTTGTTGACAACCAGCG
122023 GCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
131 GCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
122057 TGAGTGGCAC
Statistics
Matches: 157, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
196 113 0.72
197 44 0.28
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (197 bp):
GGCCCCTTCGTTGTGAAGTTGAACTTGTGCTGTCTGAAACTGGGAAATTTTTGTTGACAACCAAC
GGCCCCTTCGTTGTAAAGTTGAACTTGTGTTGTCTGAAACTGGGAAATTTTGTTGACAACCAGCG
GCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGATACTGGAAAAAAAATTTTGTCGACAACCA
GT
Found at i:123117 original size:15 final size:15
Alignment explanation
Indices: 123090--123126 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
123080 ACCCACCTTG
123090 TTTTTTC-TTTTCT-
1 TTTTTTCTTTTTCTC
123103 TTTTGTTCTTTTTCTC
1 TTTT-TTCTTTTTCTC
123119 TTTTTTCT
1 TTTTTTCT
123127 ATTTAGGGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.19
14 3 0.14
15 10 0.48
16 4 0.19
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (15 bp):
TTTTTTCTTTTTCTC
Found at i:129082 original size:15 final size:15
Alignment explanation
Indices: 129062--129093 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
129052 AACTGCTCCC
129062 TTTCCTTTTCTCTTT
1 TTTCCTTTTCTCTTT
129077 TTTCCTTTTCTCTTT
1 TTTCCTTTTCTCTTT
129092 TT
1 TT
129094 GGTTCTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTCCTTTTCTCTTT
Found at i:133747 original size:19 final size:20
Alignment explanation
Indices: 133708--133749 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
133698 TGAAACAAAC
133708 AAAAGGAGAATAGAAAGATA
1 AAAAGGAGAATAGAAAGATA
133728 AAAATGGAGAATA-AAA-ATA
1 AAAA-GGAGAATAGAAAGATA
133747 AAA
1 AAA
133750 GAAATTAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 7 0.33
21 8 0.38
ACGTcount: A:0.69, C:0.00, G:0.19, T:0.12
Consensus pattern (20 bp):
AAAAGGAGAATAGAAAGATA
Found at i:135090 original size:21 final size:21
Alignment explanation
Indices: 135041--135090 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
135031 GTACCATTTA
* *
135041 AATAATAAAATTAGTAATTAT
1 AATAATATAATTAGTAAATAT
135062 -ATATATATAATT-GTATAATAT
1 AATA-ATATAATTAGTA-AATAT
135083 AATAATAT
1 AATAATAT
135091 TAATACAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
20 6 0.25
21 15 0.62
22 3 0.12
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (21 bp):
AATAATATAATTAGTAAATAT
Found at i:141218 original size:19 final size:21
Alignment explanation
Indices: 141191--141231 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
141181 TTTTGTATTA
141191 CTATAATTATT-TA-ATTTTT
1 CTATAATTATTATATATTTTT
*
141210 CTATTATTATTATATATTTTT
1 CTATAATTATTATATATTTTT
141231 C
1 C
141232 CCTCTCTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
20 2 0.11
21 7 0.37
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.63
Consensus pattern (21 bp):
CTATAATTATTATATATTTTT
Found at i:151761 original size:1 final size:1
Alignment explanation
Indices: 151755--151781 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
151745 TCCTAAGTTG
151755 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
151782 CGTTTGGCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:153569 original size:105 final size:105
Alignment explanation
Indices: 152472--153561 Score: 1803
Period size: 105 Copynumber: 10.4 Consensus size: 105
152462 AGGTTTTACC
*
152472 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC-CATAGACAACGCAAGTTCAACTTCAC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC-CAGACAACGCAAGTTCAACTTCAC
*
152536 GACGAAGGGACCGCTGGTTGTCACCAAACATTTCTCCAA-TT
65 GACGAAGGGACCGCTGGTTGTCAACAAACATTTCT-CAATTT
*
152577 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC-CATAGACAACGCAAGTTCAACTTCAC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC-CAGACAACGCAAGTTCAACTTCAC
*
152641 GACGAAGGGACCGCTGGTTGTCACCAAACATTTCTCCAA-TT
65 GACGAAGGGACCGCTGGTTGTCAACAAACATTTCT-CAATTT
* *
152682 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACCCCAGACGACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
152747 ATGAAGGGACCGCTGGTTGTCACCAAACGTTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* * *
152787 CAGAGCCAATTTCAACCTCATAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACA
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
152852 ATGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* * *
152892 CAGAGCCAATTTCGACTTCACAACGAAGGATATTGGACTTCATACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
152957 ACGAAGGGACCGCTGATTGTTAACAAACGTTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
152997 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACCCCAGACAACGAAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
153062 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
153102 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
153167 ACGAAGGGACCACTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
153207 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
153272 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
153312 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * * *
153377 ACGAAGGGACCGCTGCTTGTCAAC-AACGACTTCCCAATCT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
153417 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
153482 ACGAAGGGACCGCCGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
153522 CAGAGCCAATCTCAACTTCACAACGAAGGATATTGGACTC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
153562 GAAACAACAC
Statistics
Matches: 934, Mismatches: 47, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
104 6 0.01
105 924 0.99
106 4 0.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
Found at i:155140 original size:19 final size:21
Alignment explanation
Indices: 155113--155152 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
155103 TTTTGTATTA
155113 CTATAATTATT-TA-ATTTTT
1 CTATAATTATTATATATTTTT
*
155132 CTATTATTATTATATATTTTT
1 CTATAATTATTATATATTTTT
155153 TTCCCTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 2 0.11
21 6 0.33
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (21 bp):
CTATAATTATTATATATTTTT
Found at i:156250 original size:32 final size:32
Alignment explanation
Indices: 156209--156274 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
156199 CTAACTATTT
156209 TTAAAAAAAATCATTGCCAAACTTATTTTTTG
1 TTAAAAAAAATCATTGCCAAACTTATTTTTTG
156241 TTAAAAAAAATCATTGCCAAACTTATTTTTTG
1 TTAAAAAAAATCATTGCCAAACTTATTTTTTG
156273 TT
1 TT
156275 TTGTTTTGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (32 bp):
TTAAAAAAAATCATTGCCAAACTTATTTTTTG
Found at i:159766 original size:166 final size:165
Alignment explanation
Indices: 159484--159827 Score: 449
Period size: 166 Copynumber: 2.1 Consensus size: 165
159474 ATAATTATTC
* ** *
159484 TTTT-GCGACGTTTACATGAAAAAATGCCACTAATGTACGTGATTCTGCGGCGTTTTTATAACAA
1 TTTTAGCGGCGTTTACATGAAAAAACACCACTAATGTACGTGATTCTGCGGCGTTTTTATAAAAA
* * * ** * *
159548 ACGCCGCTATCGTACAAGTCTATAGCGGCGTTTTTTCAAAAGCGCCAGTAATGCATGAGTTTATA
66 ACACCACTATCGTACAAGTCTATAGCGACGTTCCTCCAAAAACGCCAGTAATG-ATGAGTTT-TA
* *
159613 ACGGCGTTTTTAAT-AAAACAACAATACATTACGAGA
129 ACGGCATTTTTAATAAAAACAACAATACAGTACGAGA
* * *
159649 TTTTAGCGGCGTTTACATGAAAAAACACCACTAATGTATGTGATTTTGTGGCGTTTTTATAAAAA
1 TTTTAGCGGCGTTTACATGAAAAAACACCACTAATGTACGTGATTCTGCGGCGTTTTTATAAAAA
* * *
159714 ACACCACTATTGTACAAGTCTATAGCGATGTTCCTCCAAAAACGCCAGTAATGATGAGTTTTAGC
66 ACACCACTATCGTACAAGTCTATAGCGACGTTCCTCCAAAAACGCCAGTAATGATGAGTTTTAAC
** * *
159779 GGCATTTTTAATAAAAACGCCAGTACAGTACGATA
131 GGCATTTTTAATAAAAACAACAATACAGTACGAGA
159814 TTTTAGCGGCGTTT
1 TTTTAGCGGCGTTT
159828 TACACAAACG
Statistics
Matches: 154, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
164 14 0.09
165 43 0.28
166 97 0.63
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (165 bp):
TTTTAGCGGCGTTTACATGAAAAAACACCACTAATGTACGTGATTCTGCGGCGTTTTTATAAAAA
ACACCACTATCGTACAAGTCTATAGCGACGTTCCTCCAAAAACGCCAGTAATGATGAGTTTTAAC
GGCATTTTTAATAAAAACAACAATACAGTACGAGA
Found at i:161991 original size:15 final size:16
Alignment explanation
Indices: 161966--161999 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
161956 TATTATTATT
161966 AAAAAATAAATCAAAC
1 AAAAAATAAATCAAAC
*
161982 AAAAAA-AAATCCAAC
1 AAAAAATAAATCAAAC
161997 AAA
1 AAA
162000 TAATTAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAAAAATAAATCAAAC
Found at i:162387 original size:22 final size:24
Alignment explanation
Indices: 162356--162399 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
162346 ATATAAAATT
162356 TTAAACTTTTTA-TTTAAAAACAC
1 TTAAACTTTTTATTTTAAAAACAC
162379 TTAAA-TTTTTATTTTAAAAAC
1 TTAAACTTTTTATTTTAAAAAC
162400 CTACTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (24 bp):
TTAAACTTTTTATTTTAAAAACAC
Found at i:164987 original size:2 final size:2
Alignment explanation
Indices: 164982--165018 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
164972 AAGGATAATT
164982 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
165019 CTTTTTATCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:165721 original size:33 final size:34
Alignment explanation
Indices: 165684--165792 Score: 100
Period size: 35 Copynumber: 3.2 Consensus size: 34
165674 GGTAAGAAAT
* * *
165684 TTATTTTTATGTTAGTAT-TTT-TTTAAATAGTTA
1 TTATTTTTATATTAATATATTTATGTAAATA-TTA
165717 TTATTTTTATATTAATATATTTATGTAAATATTA
1 TTATTTTTATATTAATATATTTATGTAAATATTA
* *
165751 TT-TTTTT-TATTAAAATAATATTTATATAATTATTA
1 TTATTTTTATATT--AAT-ATATTTATGTAAATATTA
165786 TTTATTT
1 -TTATTT
165793 AGAATTATTA
Statistics
Matches: 64, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
32 4 0.06
33 21 0.33
34 11 0.17
35 23 0.36
36 2 0.03
37 3 0.05
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (34 bp):
TTATTTTTATATTAATATATTTATGTAAATATTA
Found at i:165746 original size:35 final size:32
Alignment explanation
Indices: 165684--165763 Score: 92
Period size: 33 Copynumber: 2.5 Consensus size: 32
165674 GGTAAGAAAT
* * *
165684 TTATTTTTATGTTAGTATTTTTTTAAATAGTTA
1 TTATTTTTATATTAATATTTTTGTAAATA-TTA
165717 TTATTTTTATATTAATATATTTATGTAAATATTA
1 TTATTTTTATATTAATAT-TTT-TGTAAATATTA
165751 TT-TTTTT-TATTAA
1 TTATTTTTATATTAA
165764 AATAATATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
32 6 0.14
33 21 0.50
34 8 0.19
35 7 0.17
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (32 bp):
TTATTTTTATATTAATATTTTTGTAAATATTA
Found at i:168054 original size:13 final size:13
Alignment explanation
Indices: 168036--168075 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
168026 TACATAAATA
168036 TATTTAATATAAT
1 TATTTAATATAAT
168049 TATTTAATATAA-
1 TATTTAATATAAT
*
168061 TATTTAATATTAT
1 TATTTAATATAAT
168074 TA
1 TA
168076 GTTATAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TATTTAATATAAT
Found at i:171077 original size:24 final size:24
Alignment explanation
Indices: 171050--171099 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
171040 TCGTTTAAAA
**
171050 TTTTAATATTGTGTTCATGTTTAT
1 TTTTAATAAGGTGTTCATGTTTAT
**
171074 TTTTTTTAAGGTGTTCATGTTTAT
1 TTTTAATAAGGTGTTCATGTTTAT
171098 TT
1 TT
171100 ATTTATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.18, C:0.04, G:0.14, T:0.64
Consensus pattern (24 bp):
TTTTAATAAGGTGTTCATGTTTAT
Found at i:176146 original size:36 final size:36
Alignment explanation
Indices: 176105--176180 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
176095 ATTTTCGGGA
*
176105 TTTTGCTATTTTTGGCAAAATTCGAATAAATACGAT
1 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
176141 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
1 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
176177 TTTT
1 TTTT
176181 TTTTGCTATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (36 bp):
TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
Found at i:176624 original size:15 final size:15
Alignment explanation
Indices: 176604--176633 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
176594 TATCACAATC
176604 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
176619 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
176634 AGCACCGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.47, T:0.13
Consensus pattern (15 bp):
GCGCAGGATTCCGGG
Found at i:181163 original size:14 final size:14
Alignment explanation
Indices: 181144--181171 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
181134 CCACGGTGCT
181144 CCGGAATCCTGCGC
1 CCGGAATCCTGCGC
181158 CCGGAATCCTGCGC
1 CCGGAATCCTGCGC
181172 GATTGTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.43, G:0.29, T:0.14
Consensus pattern (14 bp):
CCGGAATCCTGCGC
Found at i:181644 original size:36 final size:36
Alignment explanation
Indices: 181594--181669 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
181584 TATAGCAAAA
*
181594 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
181630 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
181666 AAAA
1 AAAA
181670 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:188493 original size:18 final size:19
Alignment explanation
Indices: 188458--188494 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
188448 CATGGAATGT
188458 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
188478 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
188495 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:188718 original size:37 final size:37
Alignment explanation
Indices: 188645--188719 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
188635 GTTAGAAAAT
* *
188645 ATTTATATATTTTTTTAAAAAAATTTAAATTCATAAA
1 ATTTATATATTTTTTTAAAAAAATTGAAAATCATAAA
* *
188682 ATTTATATATTTTTTTTTACAAAATTGAAAAT-ATAAA
1 ATTTATATA-TTTTTTTAAAAAAATTGAAAATCATAAA
188719 A
1 A
188720 AGGTTTAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 15 0.45
38 18 0.55
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (37 bp):
ATTTATATATTTTTTTAAAAAAATTGAAAATCATAAA
Found at i:192242 original size:15 final size:16
Alignment explanation
Indices: 192222--192252 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
192212 TACGAATGGA
192222 ATAAAAATAT-TTTAT
1 ATAAAAATATATTTAT
192237 ATAAAAATATATTTAT
1 ATAAAAATATATTTAT
192253 CAAAATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAAAAATATATTTAT
Found at i:192257 original size:14 final size:15
Alignment explanation
Indices: 192222--192263 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
192212 TACGAATGGA
*
192222 ATAAAAATATTTTAT
1 ATAAAAATATATTAT
192237 ATAAAAATATATT-T
1 ATAAAAATATATTAT
* *
192251 ATCAAAATTTATT
1 ATAAAAATATATT
192264 CAAAATGTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAAAAATATATTAT
Found at i:195805 original size:2 final size:2
Alignment explanation
Indices: 195794--195837 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
195784 TATAAATTTT
195794 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
195835 TA T
1 TA T
195838 TAGTTCAATG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:201424 original size:229 final size:229
Alignment explanation
Indices: 201023--201484 Score: 924
Period size: 229 Copynumber: 2.0 Consensus size: 229
201013 ACATCCACTG
201023 ATCCAATTCCCAGTCACATAAGTTTCTCCTTAACTGAATATTCCAAATCCAACCATTATTTTCAA
1 ATCCAATTCCCAGTCACATAAGTTTCTCCTTAACTGAATATTCCAAATCCAACCATTATTTTCAA
201088 AGCACCCAAAATCTGCCACTTTTCCTTTTTTATTGTTCGATAGAGCGAATATCCTAGGGAACTGA
66 AGCACCCAAAATCTGCCACTTTTCCTTTTTTATTGTTCGATAGAGCGAATATCCTAGGGAACTGA
201153 CTCTTTAAGGAAGAGCCATTGACCCAATCATCATTCCAAAATTCAATTGATCTACCATTCCCCAC
131 CTCTTTAAGGAAGAGCCATTGACCCAATCATCATTCCAAAATTCAATTGATCTACCATTCCCCAC
201218 GTGAATCTTCGAATTGGACCTCAAGCACTCCCCT
196 GTGAATCTTCGAATTGGACCTCAAGCACTCCCCT
201252 ATCCAATTCCCAGTCACATAAGTTTCTCCTTAACTGAATATTCCAAATCCAACCATTATTTTCAA
1 ATCCAATTCCCAGTCACATAAGTTTCTCCTTAACTGAATATTCCAAATCCAACCATTATTTTCAA
201317 AGCACCCAAAATCTGCCACTTTTCCTTTTTTATTGTTCGATAGAGCGAATATCCTAGGGAACTGA
66 AGCACCCAAAATCTGCCACTTTTCCTTTTTTATTGTTCGATAGAGCGAATATCCTAGGGAACTGA
201382 CTCTTTAAGGAAGAGCCATTGACCCAATCATCATTCCAAAATTCAATTGATCTACCATTCCCCAC
131 CTCTTTAAGGAAGAGCCATTGACCCAATCATCATTCCAAAATTCAATTGATCTACCATTCCCCAC
201447 GTGAATCTTCGAATTGGACCTCAAGCACTCCCCT
196 GTGAATCTTCGAATTGGACCTCAAGCACTCCCCT
201481 ATCC
1 ATCC
201485 GATCCTCTCT
Statistics
Matches: 233, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
229 233 1.00
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (229 bp):
ATCCAATTCCCAGTCACATAAGTTTCTCCTTAACTGAATATTCCAAATCCAACCATTATTTTCAA
AGCACCCAAAATCTGCCACTTTTCCTTTTTTATTGTTCGATAGAGCGAATATCCTAGGGAACTGA
CTCTTTAAGGAAGAGCCATTGACCCAATCATCATTCCAAAATTCAATTGATCTACCATTCCCCAC
GTGAATCTTCGAATTGGACCTCAAGCACTCCCCT
Done.