genome.fa.s3858.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003858.1 Hibiscus syriacus cultivar Beakdansim tig00008295_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144561

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6255--6292	20	2.0	20	84	5	51	73	2	18	5	1.14
6337--6380	7	5.9	7	82	12	52	77	2	18	2	0.98
7304--7423	43	2.8	43	81	0	150	35	30	12	22	1.91
9599--9686	19	4.8	18	70	18	65	28	6	0	64	1.19
9668--9742	30	2.5	30	81	12	91	14	9	1	74	1.12
9710--9745	18	2.0	18	89	10	56	8	11	2	77	1.08
9700--9799	41	2.5	40	82	8	112	14	10	1	75	1.11
9700--9820	43	2.9	42	80	15	110	14	9	1	75	1.12
9700--9794	42	2.3	42	85	8	124	13	10	1	74	1.12
9786--9833	22	2.2	21	85	10	62	16	4	4	75	1.12
9857--9891	11	3.2	11	84	15	54	14	0	2	82	0.77
9859--9909	22	2.3	22	83	6	59	13	5	1	78	1.02
10318--10541	55	4.1	55	87	4	294	29	21	20	28	1.98
12128--12184	24	2.3	24	80	11	62	31	3	14	50	1.59
13183--13222	16	2.6	16	88	4	55	35	20	7	37	1.81
21125--21171	18	2.7	18	86	3	60	29	27	6	36	1.82
24950--25067	43	2.7	43	82	2	148	32	16	23	27	1.96
25090--25203	43	2.7	43	84	4	142	17	14	27	41	1.88
25131--25214	43	2.0	43	83	4	107	22	14	23	39	1.91
25617--25688	21	3.4	21	86	0	99	4	36	16	43	1.68
25670--25709	21	1.9	21	89	0	62	2	37	22	37	1.68
38314--38610	147	2.0	148	94	1	526	41	11	8	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42327--42404	31	2.5	32	81	6	97	28	17	10	43	1.82
42578--42618	21	2.0	21	90	0	64	19	21	26	31	1.97
44790--44854	31	2.1	30	91	2	103	23	26	13	36	1.92
45365--45400	15	2.4	15	90	0	54	11	11	5	72	1.28
45954--45981	3	9.3	3	100	0	56	67	0	0	32	0.91
48818--48857	14	2.7	15	76	7	55	40	10	22	27	1.86
58497--58562	20	3.5	18	80	12	62	37	0	3	59	1.13
58511--58562	18	2.8	17	81	16	59	40	0	3	55	1.18
58799--58875	21	3.5	20	72	17	55	38	6	10	44	1.65
59630--59660	5	6.2	5	92	0	53	80	3	0	16	0.83
59947--60059	29	3.8	29	74	14	88	64	9	10	15	1.49
61595--61650	3	18.3	3	81	3	67	64	1	1	32	1.14
61903--62279	130	2.9	131	80	9	433	24	14	33	27	1.95
62054--62258	40	4.8	40	67	19	108	24	15	34	25	1.95
61903--62277	135	2.8	132	83	4	452	24	14	33	26	1.95
62407--62588	70	2.6	70	90	4	271	41	13	13	31	1.83
62476--62597	33	3.6	33	68	8	91	42	13	13	31	1.82
62459--62570	37	3.1	37	68	10	106	45	15	12	26	1.81
62474--62776	168	1.8	166	82	7	387	39	12	13	34	1.83
70472--70530	21	2.8	20	77	10	55	1	16	3	77	0.98
70463--70524	26	2.4	25	75	20	63	1	17	3	77	0.98
74210--74240	5	6.2	5	92	0	53	80	3	0	16	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76187--76218	3	10.3	3	93	6	55	65	0	0	34	0.93
77288--77335	22	2.2	22	81	7	53	56	6	2	35	1.36
76971--77646	337	2.0	336	91	2	1106	44	7	4	42	1.55
78294--78339	21	2.2	21	96	0	83	23	28	15	32	1.95
88123--88184	23	2.7	22	82	9	70	40	0	3	56	1.15
88302--88371	23	3.0	24	73	12	74	51	1	0	47	1.09
88278--88414	46	3.0	45	82	9	131	48	2	0	47	1.22
93860--94079	2	111.0	2	66	21	72	50	3	3	43	1.36
93860--94079	13	17.3	13	65	24	82	50	3	3	43	1.36
93858--93931	17	4.2	18	75	18	66	55	1	1	41	1.17
93864--93962	34	3.0	34	76	18	109	52	2	2	43	1.24
94180--94265	19	4.6	19	76	11	88	45	0	27	26	1.54
94155--94243	46	2.0	45	86	6	126	47	0	26	25	1.53
94618--94675	21	2.8	21	67	0	53	44	27	3	24	1.69
94731--94784	15	4.0	14	78	11	60	48	7	1	42	1.42
95285--95328	11	3.7	11	82	14	52	47	11	0	40	1.39
95285--95340	13	4.3	13	80	15	62	46	12	0	41	1.42
95260--95303	20	2.2	20	84	4	63	47	6	6	38	1.57
95462--95488	14	1.9	14	100	0	54	59	22	0	18	1.38
96184--96238	2	27.5	2	100	0	110	49	0	0	50	1.00
96247--96289	22	1.9	23	95	4	79	44	0	0	55	0.99
96396--96453	21	2.8	21	83	0	71	51	27	0	20	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96612--96654	13	3.1	14	86	10	61	41	0	0	58	0.98
96677--96721	15	2.9	15	83	9	56	48	2	4	44	1.35
96677--96732	17	3.2	17	82	12	78	50	3	3	42	1.37
96677--96723	2	23.0	2	79	12	51	48	2	4	44	1.34
96807--96881	7	10.7	7	85	0	60	49	29	0	21	1.50
96721--96825	48	2.1	49	84	3	131	49	12	5	32	1.64
96808--96880	21	3.5	21	79	7	76	49	28	0	21	1.50
97102--97139	13	2.7	15	84	16	62	44	0	0	55	0.99
102205--102265	23	2.7	23	78	0	77	32	24	24	18	1.97
102997--103045	19	2.5	20	80	16	66	42	8	2	46	1.45
103332--103376	21	2.1	22	87	4	65	33	13	0	53	1.40
103567--103616	22	2.3	22	100	0	100	44	30	0	26	1.55
111857--111971	60	1.9	60	85	3	160	34	16	13	35	1.87
113165--113223	28	2.2	27	93	6	102	38	25	11	23	1.89
113796--113850	24	2.4	24	85	11	71	56	0	7	36	1.27
113879--113933	19	3.0	18	75	25	53	40	1	1	56	1.21
114039--114078	16	2.3	18	87	12	57	60	0	2	37	1.11
115164--115240	35	2.2	35	86	4	102	27	22	9	41	1.83
130095--130139	20	2.2	20	96	0	81	6	22	24	46	1.75
131760--131850	45	2.0	46	91	4	148	27	18	14	39	1.89
139400--139452	21	2.5	21	96	0	97	18	11	26	43	1.84
141894--141923	9	3.4	9	95	4	53	0	23	40	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142862--142889	13	2.2	13	100	0	56	53	0	0	46	1.00
143110--143167	23	2.5	23	97	0	107	25	22	3	48	1.66
144137--144186	17	2.9	17	80	11	66	44	10	12	34	1.75

Tables:   1

The End!