Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003859.1 Hibiscus syriacus cultivar Beakdansim tig00008296_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90230

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
195--242
13
3.9
13
78
10
57
18
47
20
12
1.81
2546--2636
24
3.8
24
85
2
121
25
17
19
37
1.94
2546--2636
47
1.9
48
88
2
139
25
17
19
37
1.94
4985--5070
24
3.6
24
85
3
129
27
15
19
37
1.92
9697--9749
3
17.7
3
100
0
106
66
0
0
33
0.92
12232--12281
21
2.4
21
93
0
82
34
10
20
36
1.86
18399--18437
18
2.2
18
100
0
78
35
5
30
28
1.79
20493--20520
5
5.6
5
100
0
56
21
0
0
78
0.75
20665--20723
22
2.8
21
80
14
59
54
1
1
42
1.20
26153--26190
2
19.0
2
100
0
76
50
0
0
50
1.00
32128--32181
21
2.6
21
100
0
108
14
46
24
14
1.83
36513--36574
23
2.9
21
85
7
81
20
35
25
17
1.95
36515--36600
21
4.1
20
74
14
66
22
34
26
16
1.95
42400--42443
23
1.9
23
85
0
61
50
13
20
15
1.78
51174--51336
90
1.8
88
89
3
256
46
7
9
36
1.65
54450--54632
75
2.4
74
79
6
181
36
14
22
26
1.93
56002--56231
118
1.9
118
97
0
433
30
23
22
23
1.99
57843--57875
17
1.9
17
88
11
50
72
0
0
27
0.85
58947--58995
19
2.6
19
93
0
80
26
28
20
24
1.99
61327--61374
21
2.2
22
89
10
73
64
14
0
20
1.28
63322--63378
23
2.7
21
76
12
62
29
22
17
29
1.97
64170--64197
12
2.3
12
100
0
56
78
0
0
21
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64298--64338
9
4.9
8
85
8
55
73
0
2
24
0.96
66645--67118
84
5.7
84
78
1
441
22
20
23
34
1.97
66625--67080
168
2.7
168
81
1
495
22
19
23
33
1.97
67621--67659
19
2.1
19
95
0
69
23
33
17
25
1.96
68239--68496
94
2.7
95
86
6
344
31
18
16
33
1.94
68239--68500
95
2.7
96
86
7
345
31
18
16
33
1.93
73972--74157
95
1.9
98
88
5
281
34
17
13
33
1.90
73973--74204
95
2.4
94
84
6
279
33
16
14
34
1.90
78254--78307
20
2.6
21
75
21
60
40
0
11
48
1.39
79219--79785
84
6.8
84
83
1
649
23
18
22
34
1.96
79219--79785
253
2.3
248
83
3
690
23
18
22
34
1.96
80923--81183
95
2.7
95
85
4
328
32
16
17
32
1.93
82682--82715
17
2.0
17
88
11
52
76
0
14
8
1.01
83231--83486
95
2.7
94
86
4
320
31
16
18
33
1.93
87501--87554
20
2.6
21
75
21
60
40
0
11
48
1.39
87550--87589
20
2.0
20
86
13
57
55
10
2
32
1.47
88103--88757
164
4.0
165
84
4
800
23
19
23
33
1.97
88103--88796
84
8.4
83
83
2
763
23
19
23
33
1.97
89888--90137
92
2.7
94
85
8
314
32
17
18
32
1.94

Tables:   1

The End!