Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003860.1 Hibiscus syriacus cultivar Beakdansim tig00008298_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98264

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1271--1318
19
2.5
20
82
3
62
31
10
6
52
1.60
2185--2245
34
1.9
32
83
12
81
26
29
13
31
1.93
2586--2627
21
2.0
21
90
0
66
14
26
40
19
1.89
5883--5910
14
2.0
14
100
0
56
28
0
7
64
1.20
9823--9859
15
2.5
15
95
0
65
16
24
8
51
1.71
10763--11018
126
2.0
129
90
3
410
47
14
10
27
1.76
13513--13546
17
2.1
16
88
5
50
35
11
20
32
1.89
15437--15480
2
22.0
2
100
0
88
50
0
0
50
1.00
27589--27661
19
3.8
20
92
3
107
20
19
34
26
1.96
27627--27784
65
2.4
65
80
10
189
25
17
24
32
1.97
42386--42546
65
2.5
65
85
5
211
27
19
22
29
1.98
42386--42596
65
3.3
63
79
9
205
27
19
23
30
1.98
43059--43089
2
15.5
2
100
0
62
51
0
0
48
1.00
49160--49199
21
1.9
21
89
0
62
30
7
5
57
1.48
51142--51299
65
2.5
64
84
5
194
27
20
22
29
1.98
54471--54633
65
2.5
63
81
9
161
30
25
18
26
1.98
54520--54680
65
2.5
64
82
3
180
30
25
16
27
1.97
60284--60339
22
2.7
21
83
10
62
30
23
17
28
1.97
61867--61910
21
2.1
21
86
0
61
9
36
15
38
1.80
62930--63090
65
2.5
65
83
5
193
29
25
16
27
1.97
63927--64010
43
2.0
43
90
0
132
35
13
22
28
1.92
64455--64528
37
2.0
37
94
0
130
52
13
0
33
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67017--67073
15
3.7
15
79
13
55
68
1
5
24
1.20
68084--68132
3
16.3
3
100
0
98
67
0
0
32
0.91
68350--68420
35
2.0
35
100
0
142
33
8
28
29
1.86
69554--69637
29
2.9
29
78
0
87
38
11
26
23
1.90
73666--73704
12
3.2
12
96
3
69
82
0
2
15
0.79
73666--73763
17
5.6
17
73
14
67
73
1
3
22
1.03
73673--73751
4
18.8
4
78
17
63
72
0
2
25
0.98
73770--74050
36
7.8
36
78
13
233
43
11
3
42
1.57
87037--87284
123
2.0
123
99
0
487
39
8
14
37
1.77
91157--91216
22
2.7
22
94
0
102
25
26
25
23
2.00
97979--98039
20
2.9
21
85
11
72
19
26
32
21
1.97

Tables:   1

The End!