Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003861.1 Hibiscus syriacus cultivar Beakdansim tig00008299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102988

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
421--506
2
44.5
2
90
6
142
52
47
0
0
1.00
2612--2664
27
1.9
28
81
11
65
49
11
20
18
1.78
6006--6035
14
2.1
14
93
0
51
66
0
0
33
0.92
6075--6124
2
25.0
2
100
0
100
50
0
0
50
1.00
6721--6763
21
2.2
18
88
12
59
46
0
0
53
1.00
9956--9996
15
2.8
15
88
3
57
41
24
7
26
1.81
10268--10314
15
3.1
15
76
11
51
53
0
10
36
1.36
16940--17358
212
2.0
212
95
0
757
33
15
15
34
1.90
17353--17394
19
2.2
19
86
0
57
33
0
0
66
0.92
21279--21316
9
4.2
9
93
0
67
65
0
31
2
1.06
24833--24877
20
2.2
20
80
11
56
55
8
8
26
1.60
25515--25572
30
1.9
31
89
3
91
22
18
22
36
1.95
28919--28958
21
1.9
21
94
0
71
22
20
22
35
1.96
33035--33725
258
2.7
257
88
2
967
33
15
16
34
1.91
33857--33924
3
22.7
3
76
11
68
32
0
2
64
1.08
33858--33892
16
2.3
15
90
5
52
37
0
0
62
0.95
37036--37218
41
4.4
42
82
6
192
21
25
20
32
1.97
37068--37229
44
3.8
44
81
8
192
20
26
19
32
1.97
37036--37218
83
2.2
83
84
3
242
21
25
20
32
1.97
37207--37286
39
2.1
38
86
6
108
15
27
25
32
1.95
57322--57367
7
7.1
7
88
11
64
84
0
0
15
0.62
57322--57367
13
3.6
13
91
8
69
84
0
0
15
0.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57322--57369
20
2.5
19
90
10
64
83
0
0
16
0.65
64358--64396
17
2.3
17
90
0
69
46
5
17
30
1.70
67695--67791
47
2.1
46
82
5
115
29
10
14
45
1.78
71156--71194
20
2.0
20
94
0
69
43
25
7
23
1.80
75327--75395
23
3.0
23
80
0
75
27
23
26
23
2.00
75414--75628
103
2.1
103
95
0
385
36
24
13
26
1.92
80526--80594
23
3.0
23
89
0
102
26
26
27
20
1.99
80610--80827
103
2.1
103
94
0
382
36
23
14
25
1.92
81780--81816
18
2.0
19
89
5
58
48
16
5
29
1.68
87167--87214
20
2.3
20
82
3
60
16
0
14
68
1.21
87305--87338
14
2.4
14
100
0
68
64
14
5
14
1.46
96836--96893
24
2.5
24
83
8
66
36
0
43
20
1.52
96889--96955
24
2.8
25
72
6
75
38
0
35
25
1.56
98173--98305
41
3.3
39
78
7
140
31
18
15
34
1.92
98152--98304
81
1.9
82
86
4
220
32
18
15
33
1.92
100525--100588
31
2.1
31
93
0
110
37
18
6
37
1.76
101149--101262
35
3.3
35
86
2
149
42
18
5
33
1.73

Tables:   1

The End!