Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003862.1 Hibiscus syriacus cultivar Beakdansim tig00008300_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56895

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
175--324
32
4.7
33
85
5
157
32
19
14
34
1.91
175--324
63
2.4
65
79
4
162
32
19
14
34
1.91
1530--1702
45
3.9
44
82
6
197
40
10
17
31
1.84
1494--1702
89
2.3
88
82
6
242
40
10
18
30
1.84
8339--8560
45
5.0
45
84
6
256
41
9
18
30
1.82
8339--8548
90
2.4
89
86
4
282
40
9
19
30
1.84
8317--8590
135
2.0
133
79
9
290
39
9
18
32
1.83
11403--11432
15
1.9
16
93
6
53
73
0
0
26
0.84
11392--11434
13
3.4
12
81
9
50
76
0
0
23
0.78
11834--11858
3
8.3
3
100
0
50
32
36
32
0
1.58
13784--13833
25
2.0
26
88
11
77
32
0
6
62
1.20
14566--14631
24
2.7
24
82
17
66
54
0
4
40
1.21
14575--14709
58
2.4
56
80
10
157
47
1
1
49
1.19
14655--14689
12
2.9
12
91
0
61
48
2
0
48
1.16
14937--14976
2
20.0
2
100
0
80
50
0
0
50
1.00
18081--18171
2
45.5
2
100
0
182
50
0
0
49
1.00
18345--18404
31
1.9
32
86
3
86
45
13
16
25
1.84
23773--23832
30
2.0
29
87
3
84
40
8
18
33
1.80
26002--26171
33
5.2
33
95
0
277
44
15
16
23
1.85
26406--26510
42
2.5
42
80
0
120
27
20
22
28
1.99
26449--26507
21
2.8
21
78
0
64
23
23
22
30
1.99
26723--26810
28
3.1
28
85
3
115
43
10
17
29
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32311--32378
31
2.3
30
84
5
84
33
7
25
33
1.83
34008--34143
33
4.1
33
97
0
236
44
14
14
26
1.84
34444--34505
21
3.0
21
75
0
70
25
20
25
27
1.99
34382--34505
42
3.0
42
78
0
140
28
20
23
27
1.99
34699--34740
13
3.1
13
75
24
50
45
9
9
35
1.69
34697--34779
28
3.0
28
83
3
105
44
9
16
28
1.80
35656--35715
24
2.5
24
81
10
77
33
38
1
26
1.67
35659--35715
30
1.9
30
89
7
89
33
38
1
26
1.67
37157--37220
24
2.5
26
77
12
69
65
4
0
29
1.13
39972--40006
17
2.0
18
94
5
63
40
8
0
51
1.33
43013--43053
15
3.0
14
86
10
50
31
0
2
65
1.05
49543--49640
23
4.4
23
72
10
78
46
16
22
14
1.82
49558--49655
43
2.3
43
92
0
160
43
18
22
15
1.87
49583--49655
20
3.5
20
75
10
74
43
16
23
16
1.87

Tables:   1

The End!