genome.fa.s3863.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003863.1 Hibiscus syriacus cultivar Beakdansim tig00008310_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112299

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3243--3328	21	4.0	21	75	11	77	22	37	24	16	1.93
8006--8081	21	3.7	21	96	1	136	27	18	34	19	1.95
8144--8201	21	2.8	21	100	0	116	24	18	36	20	1.95
8283--8342	30	2.0	30	96	0	111	45	20	5	30	1.72
9011--9042	11	2.9	11	100	0	64	34	9	9	46	1.68
13782--13854	27	2.7	27	89	4	112	21	23	19	35	1.96
15630--15711	29	2.8	29	94	1	137	32	14	9	42	1.79
20399--20480	29	2.8	29	94	1	137	32	14	9	42	1.79
24037--24147	56	2.0	55	87	1	159	41	21	17	19	1.90
26224--26284	31	1.9	32	90	3	97	49	9	1	39	1.46
26512--26546	13	2.6	14	90	4	54	40	0	5	54	1.24
30266--30300	15	2.4	15	85	4	54	71	0	2	25	1.00
30883--30955	26	2.8	26	97	0	137	43	10	2	42	1.54
39205--39236	16	2.0	16	93	0	55	18	21	12	46	1.82
42097--42136	19	2.1	19	100	0	80	45	0	0	55	0.99
49442--49473	16	2.0	16	93	0	55	18	21	12	46	1.82
54015--54044	2	15.0	2	100	0	60	50	0	0	50	1.00
58983--59062	24	3.5	23	72	17	78	28	22	25	23	1.99
62439--62466	13	2.2	13	100	0	56	53	14	7	25	1.66
64851--65034	65	2.8	65	79	10	191	27	19	21	31	1.97
64984--65032	19	2.6	19	84	9	57	26	16	28	28	1.97
64874--65084	65	3.3	64	78	4	201	27	18	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67791--67872	29	2.8	28	78	7	74	47	9	19	23	1.79
68942--68976	18	1.9	18	88	0	52	57	0	2	40	1.14
69360--69400	16	2.5	17	80	11	50	39	0	0	60	0.96
70470--70531	21	3.0	21	95	2	108	16	27	41	14	1.87
71982--72029	19	2.5	20	82	3	62	29	12	6	52	1.63
73306--73406	21	4.9	20	83	7	114	14	27	36	20	1.92
73936--73975	20	2.0	20	90	0	62	65	5	0	30	1.14
74717--74772	15	3.6	15	79	9	67	42	12	12	32	1.80
74720--74770	17	3.1	17	77	11	61	43	11	9	35	1.75
75168--75222	13	4.2	13	75	13	58	49	12	3	34	1.59
75208--75306	33	3.0	33	94	1	164	45	15	7	32	1.73
75301--75340	21	1.9	21	94	0	71	47	7	15	30	1.72
77632--77674	12	3.3	12	79	17	50	13	18	18	48	1.80
79933--79972	20	2.1	19	90	9	64	27	17	5	50	1.67
80155--80200	2	23.0	2	100	0	92	0	50	0	50	1.00
91198--91272	38	2.0	37	84	5	98	48	4	1	46	1.29
92448--92513	33	2.0	33	82	8	80	36	0	3	60	1.12
95097--95145	22	2.2	22	82	13	64	40	10	8	40	1.69
95099--95145	23	2.0	23	88	8	69	42	10	6	40	1.65
98412--99371	324	3.0	324	94	0	1609	36	13	25	24	1.92
99910--99944	17	2.1	17	94	0	61	40	11	11	37	1.77
105664--105788	61	2.0	62	89	3	191	41	3	4	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105577--105842	137	1.9	137	91	3	437	42	3	3	50	1.34
105664--105807	61	2.3	60	86	6	175	41	2	3	52	1.33
111820--111866	15	3.1	15	84	0	67	14	34	17	34	1.90

Tables:   1

The End!