genome.fa.s3864.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003864.1 Hibiscus syriacus cultivar Beakdansim tig00008314_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136667

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3425--3584	54	3.0	54	89	2	234	38	15	21	24	1.92
4639--5167	45	12.0	45	87	4	758	22	23	20	32	1.98
4639--5167	132	4.0	133	87	5	770	22	23	20	32	1.98
5445--5500	3	19.3	3	82	14	73	33	1	0	64	1.04
5460--5518	27	2.2	27	84	6	75	40	1	0	57	1.09
6625--6696	30	2.4	30	79	20	89	27	4	2	65	1.25
6588--6697	29	3.7	29	74	20	86	31	5	1	60	1.30
6616--6697	30	2.7	29	77	20	80	29	4	2	63	1.28
6850--6882	15	2.1	16	88	5	50	42	3	0	54	1.15
7766--7809	2	22.5	2	86	4	63	50	0	0	50	1.00
8225--8397	59	2.9	59	77	7	172	38	5	24	32	1.77
11929--11965	2	18.5	2	100	0	74	48	0	0	51	1.00
15612--15660	21	2.3	21	92	0	80	30	2	20	46	1.62
16834--16860	2	13.5	2	100	0	54	51	0	0	48	1.00
18557--18873	131	2.4	129	80	4	332	38	15	11	33	1.84
19987--20035	7	7.0	7	81	9	64	14	6	0	79	0.91
19995--20033	13	2.8	13	92	7	60	12	7	0	79	0.93
19987--20035	21	2.3	21	93	6	82	14	6	0	79	0.91
19986--20027	8	5.6	8	81	16	54	11	7	0	80	0.88
19987--20033	15	3.4	14	91	5	69	12	6	0	80	0.88
21187--21616	133	3.2	134	82	2	474	29	16	21	33	1.95
22926--22981	29	2.0	28	86	6	78	23	25	19	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22934--22990	29	2.0	29	82	0	69	33	22	14	29	1.93
26836--26883	18	2.8	17	81	6	60	20	4	14	60	1.51
26836--26878	18	2.4	18	84	3	61	20	2	13	62	1.42
29523--29616	42	2.3	42	83	5	120	29	22	20	27	1.98
29765--29844	42	1.9	42	84	0	106	36	21	18	23	1.95
29311--30042	233	3.1	232	82	5	792	33	17	14	34	1.91
36688--37022	129	2.6	131	82	2	415	39	16	11	32	1.85
37310--37423	27	4.2	27	97	0	219	33	12	9	44	1.74
39135--39171	3	12.3	3	88	11	58	67	0	0	32	0.91
39805--39830	5	5.2	5	100	0	52	23	57	19	0	1.40
40161--40225	29	2.3	29	86	2	87	29	20	7	43	1.79
40752--40923	60	2.9	60	78	3	184	38	5	23	32	1.77
41540--41577	6	6.3	6	93	0	67	0	18	0	81	0.69
46347--46389	2	21.5	2	100	0	86	48	0	0	51	1.00
47356--47400	2	22.5	2	100	0	90	48	0	0	51	1.00
47894--47927	17	1.9	18	94	5	61	20	17	0	61	1.34
47915--47985	24	3.2	24	74	18	64	30	0	1	67	0.99
47915--47985	23	3.2	23	77	16	71	30	0	1	67	0.99
49253--49306	24	2.2	24	90	0	81	22	18	18	40	1.91
57588--57627	21	1.9	21	89	0	62	25	40	25	10	1.86
61148--61188	18	2.3	18	83	8	57	51	26	2	19	1.59
61361--61470	20	5.5	20	92	0	175	31	22	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61516--61558	20	2.1	21	86	4	61	11	13	23	51	1.74
61520--61568	20	2.5	20	80	6	55	14	14	28	42	1.84
61688--61724	14	2.6	14	95	0	65	45	21	2	29	1.65
63109--63212	21	5.0	21	73	3	84	26	18	31	23	1.97
63107--63212	42	2.5	42	75	0	104	26	17	33	22	1.96
63693--63735	20	2.2	20	91	0	68	51	18	13	16	1.77
63865--63913	20	2.5	20	80	6	55	20	18	22	38	1.93
63900--63949	20	2.5	20	93	0	82	12	14	26	48	1.78
65843--65893	20	2.5	20	93	0	84	50	23	13	11	1.74
66610--66656	21	2.2	21	80	0	58	34	19	21	25	1.96
66569--66684	41	2.8	41	74	3	108	31	18	22	27	1.97
66675--66701	13	2.1	13	100	0	54	48	14	14	22	1.81
66703--66748	19	2.4	19	85	3	56	21	19	28	30	1.98
66714--66750	19	1.9	19	94	0	65	21	16	29	32	1.95
67568--67671	29	3.6	29	76	6	95	51	13	8	25	1.69
67699--67840	59	2.4	59	95	1	259	19	7	38	35	1.79
71362--71405	3	14.0	3	81	9	52	61	0	0	38	0.96
72037--72125	10	8.4	10	69	16	63	4	14	2	78	1.00
72063--72124	21	3.0	20	83	7	70	6	14	0	79	0.93
72068--72122	28	2.0	28	89	7	85	5	14	0	80	0.89
72061--72101	10	4.1	10	90	9	66	7	12	0	80	0.90
72088--72126	15	2.5	16	87	4	53	2	15	0	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72171--72980	236	3.4	238	88	2	1144	35	16	15	32	1.91
72980--73139	56	2.8	56	78	6	160	41	15	10	33	1.81
73197--73288	44	2.1	44	84	8	116	39	19	8	32	1.82
73282--73404	62	2.0	61	87	4	176	43	14	9	31	1.78
74327--74412	43	2.0	43	95	0	154	29	26	8	36	1.85
80302--80348	3	15.0	3	86	8	67	63	0	0	36	0.94
84413--84451	9	4.2	9	86	3	51	69	2	0	28	1.02
98665--99256	256	2.3	249	77	9	574	29	18	16	35	1.93
100217--100257	21	2.0	21	85	9	57	51	2	17	29	1.58
101482--101519	15	2.5	15	84	12	51	2	39	0	57	1.12
107253--107397	65	2.2	65	97	0	272	43	11	9	35	1.74
107856--107893	16	2.2	18	90	9	62	50	0	0	50	1.00
107854--107902	23	2.2	22	85	3	62	51	0	0	48	1.00
113345--113387	20	2.2	19	87	4	59	13	30	30	25	1.94
113371--113414	23	1.9	23	95	0	79	22	25	27	25	2.00
113371--113424	23	2.4	22	87	3	72	20	22	33	24	1.97
117236--117278	21	2.0	22	86	13	63	34	11	4	48	1.60
120168--120252	23	3.7	23	70	17	70	28	20	22	29	1.98
122265--122289	12	2.1	12	100	0	50	24	32	16	28	1.96
126046--126191	65	2.2	65	79	4	161	28	16	25	30	1.97
128899--128943	15	2.9	15	80	6	54	62	0	0	37	0.96
128897--128937	14	2.9	14	81	3	55	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130324--130406	18	4.6	17	75	20	71	8	4	4	81	0.96
130352--130428	22	3.5	22	77	15	70	11	7	1	79	1.00
130536--130574	17	2.3	17	100	0	78	51	0	10	38	1.36

Tables:   1

The End!