genome.fa.s3865.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003865.1 Hibiscus syriacus cultivar Beakdansim tig00008318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89786

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6040--6095	20	2.8	20	75	2	60	50	5	0	44	1.25
11214--11302	36	2.4	36	81	5	99	38	3	22	35	1.71
13785--13826	17	2.4	18	92	4	68	21	7	0	71	1.09
13887--13928	17	2.3	18	80	8	50	28	4	0	66	1.12
14194--14247	14	3.9	14	92	0	72	38	27	7	25	1.83
20270--20359	8	11.1	8	74	19	80	24	2	3	70	1.14
20270--20359	23	3.7	24	73	10	76	24	2	3	70	1.14
20270--20362	31	2.9	31	73	13	82	24	2	3	69	1.14
21652--21756	3	34.0	3	82	3	120	37	2	0	60	1.12
21652--21756	36	3.0	36	83	4	135	37	2	0	60	1.12
21681--21768	27	3.2	27	83	12	108	39	2	0	57	1.11
22810--22836	2	13.5	2	100	0	54	48	0	0	51	1.00
23453--23493	2	20.5	2	94	0	73	51	0	0	48	1.00
23979--24034	28	2.0	27	86	3	76	33	5	0	60	1.19
23979--24038	30	2.1	28	84	6	75	33	5	0	61	1.17
29656--29718	32	2.0	32	93	0	108	42	17	17	22	1.89
31434--32482	523	2.0	524	99	0	2055	31	23	14	30	1.94
32900--33138	74	3.3	74	78	7	240	34	15	20	29	1.93
32900--33138	75	3.3	71	75	10	198	34	15	20	29	1.93
34279--34891	73	8.4	73	90	1	931	26	18	21	33	1.96
34279--34891	220	2.8	219	90	2	951	26	18	21	33	1.96
35084--35129	22	2.1	22	83	0	56	36	4	2	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35127--35159	2	16.5	2	100	0	66	48	0	0	51	1.00
36752--36817	22	3.0	22	72	14	64	39	3	0	57	1.14
36753--36826	22	3.3	21	68	17	51	39	2	0	58	1.13
38390--38434	21	2.1	22	88	12	67	55	0	0	44	0.99
38888--38960	37	2.0	37	97	0	137	34	16	9	39	1.81
39441--39486	12	3.8	12	80	11	58	52	15	17	15	1.76
39441--39487	24	2.0	24	100	0	94	51	14	17	17	1.77
46790--46844	29	2.0	28	82	7	67	69	3	10	16	1.32
46938--47013	2	40.0	2	74	10	52	59	1	1	38	1.14
47021--47054	17	1.9	18	94	5	61	64	0	2	32	1.08
48612--49374	105	7.4	105	91	2	1131	22	18	24	33	1.96
48765--49374	98	6.0	98	88	8	907	22	18	24	34	1.96
56930--56972	22	1.9	21	86	13	59	67	6	6	18	1.37
60381--60435	29	2.0	28	82	7	67	69	3	10	16	1.32
60542--60584	21	2.0	22	86	4	61	69	2	2	25	1.12
60602--60635	17	1.9	18	94	5	61	64	0	2	32	1.08
64929--65041	60	1.9	60	86	0	163	35	15	12	36	1.86
68952--68999	24	2.0	24	83	0	60	39	18	22	18	1.92
69289--69364	23	3.3	23	77	3	64	38	14	6	40	1.72
76216--76373	3	52.7	3	98	0	307	65	0	0	33	0.97
76692--77564	113	7.7	113	97	0	1633	28	18	14	38	1.90
78144--78860	82	8.7	83	90	1	1073	35	21	13	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78144--78860	165	4.3	165	92	1	1123	35	21	13	29	1.92
78144--78843	247	2.8	248	92	0	1161	35	21	13	29	1.92
79606--79650	18	2.6	17	89	6	65	55	6	6	31	1.52
79991--80031	21	2.0	21	90	4	66	7	7	0	85	0.75
79993--80036	13	3.1	14	80	9	54	6	11	0	81	0.86

Tables:   1

The End!