Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003867.1 Hibiscus syriacus cultivar Beakdansim tig00008320_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54361

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2644--2669
2
13.0
2
100
0
52
50
0
0
50
1.00
12993--13074
36
2.3
35
87
4
128
26
12
42
18
1.85
15994--16077
39
2.2
39
84
0
114
19
29
19
32
1.96
16209--16245
15
2.4
16
82
17
51
27
5
10
56
1.55
23091--23165
29
2.6
28
80
4
78
49
13
5
32
1.64
25762--25810
3
17.0
3
87
12
68
30
0
0
69
0.89
27002--27089
31
2.9
29
76
20
83
30
5
2
61
1.31
27007--27089
29
2.7
29
77
22
82
28
4
2
63
1.27
27245--27277
15
2.1
16
88
5
50
42
3
0
54
1.15
28898--28969
36
2.0
36
89
5
110
41
20
11
26
1.86
29354--29440
43
2.0
44
84
6
115
32
10
24
33
1.89
29515--29555
7
6.0
7
83
10
50
14
14
12
58
1.63
36421--36581
54
3.0
54
91
0
243
37
15
22
24
1.93
37651--38222
45
12.8
45
88
1
821
22
23
20
32
1.98
38471--38531
3
21.0
3
80
12
74
32
1
0
65
1.02
38476--38523
25
2.0
24
91
4
78
35
2
0
62
1.07
38472--38531
25
2.4
24
80
5
75
33
1
0
65
1.03
38471--38543
36
2.1
36
85
7
98
36
1
0
61
1.05
39676--39747
30
2.4
30
79
20
89
27
4
2
65
1.25
39639--39748
29
3.7
29
74
20
86
31
5
1
60
1.30
39667--39748
30
2.7
29
77
20
80
29
4
2
63
1.28
39900--39932
15
2.1
16
88
5
50
42
3
0
54
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40817--40844
2
14.0
2
100
0
56
50
0
0
50
1.00
41276--41448
59
2.9
59
77
7
172
38
5
24
32
1.77
42504--42540
11
3.3
11
96
3
65
81
0
10
8
0.89
45003--45044
2
21.5
2
95
4
77
50
0
0
50
1.00
48666--48712
20
2.3
21
85
10
71
29
2
21
46
1.63
49891--49917
2
13.5
2
100
0
54
51
0
0
48
1.00
52938--52977
21
1.9
21
94
0
71
12
5
0
82
0.82

Tables:   1

The End!