Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003868.1 Hibiscus syriacus cultivar Beakdansim tig00008325_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81182

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1866--1904
20
2.0
20
84
0
51
23
17
12
46
1.83
2014--2053
21
1.9
21
85
10
55
35
10
2
52
1.48
10902--10929
2
14.0
2
100
0
56
50
0
0
50
1.00
13386--13416
2
15.5
2
100
0
62
48
0
0
51
1.00
13676--13717
16
2.7
16
85
10
52
28
0
0
71
0.86
15060--15270
107
2.0
107
94
0
368
18
13
15
52
1.75
15376--15488
30
3.7
30
80
6
129
18
11
10
59
1.60
15393--15480
31
2.9
30
83
3
113
17
13
9
60
1.58
19410--19449
13
3.2
13
89
3
55
70
7
20
2
1.24
19416--19459
13
3.4
13
87
0
52
70
9
15
4
1.30
19427--19470
13
3.2
13
84
9
52
70
6
18
4
1.27
20622--20777
66
2.4
64
82
6
199
29
14
14
41
1.85
20898--21217
131
2.4
130
80
4
372
23
34
16
25
1.95
23084--23212
30
4.3
30
83
5
154
16
10
12
60
1.59
23103--23226
60
2.1
58
86
7
169
16
13
9
59
1.60
29796--30039
135
1.8
136
87
4
368
40
6
3
49
1.48
35337--35371
18
1.9
18
94
0
61
22
28
14
34
1.93
35378--35465
31
2.8
31
91
0
149
31
22
23
21
1.98
37262--37326
23
2.8
23
70
9
69
24
26
21
27
1.99
43368--43422
21
2.8
20
86
13
78
25
21
23
29
1.99
44134--44202
23
3.0
23
93
0
111
20
26
26
27
1.99
45350--45379
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45900--45953
23
2.6
21
78
16
58
24
25
20
29
1.99
46250--46276
14
1.9
14
100
0
54
37
25
0
37
1.57
47197--47388
64
3.0
65
73
15
164
42
5
8
43
1.58
48734--48953
109
2.0
109
99
0
431
29
12
15
42
1.84
49289--49513
64
3.4
65
73
16
171
41
4
9
44
1.58
52733--52880
64
2.4
58
79
13
156
40
7
7
44
1.61
60813--60885
35
2.1
36
82
12
89
35
17
24
21
1.95
64387--64449
2
31.0
2
91
3
90
44
0
4
50
1.23
65867--66066
71
2.8
70
78
4
206
45
22
14
18
1.85
68839--68882
23
2.0
22
86
13
63
36
9
4
50
1.55
79949--79977
15
1.9
15
100
0
58
20
41
10
27
1.85

Tables:   1

The End!