genome.fa.s3869.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003869.1 Hibiscus syriacus cultivar Beakdansim tig00008331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59754

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1563--1606	16	2.8	15	86	6	52	2	22	0	75	0.92
1581--1610	15	1.9	16	93	6	53	3	20	0	76	0.92
9698--9947	15	16.5	15	68	22	141	44	0	4	51	1.25
9730--9851	24	4.9	24	75	15	131	44	0	3	52	1.17
9700--9851	54	3.0	52	79	11	181	44	0	2	52	1.14
9728--9905	76	2.3	76	99	0	347	44	0	4	50	1.22
9767--9906	37	3.7	37	78	3	163	44	0	5	50	1.26
9880--9947	14	4.5	14	77	15	73	39	1	4	54	1.30
9895--10468	32	17.4	32	68	23	268	33	0	13	53	1.43
9826--10001	54	3.5	52	77	11	161	40	0	7	51	1.36
9950--9992	22	2.0	22	100	0	86	34	0	13	51	1.42
9972--10270	80	3.7	80	89	7	492	32	0	14	53	1.44
9972--10548	112	4.9	115	70	19	367	32	0	14	53	1.42
10084--10128	22	2.1	22	95	4	83	33	0	13	53	1.40
9972--10548	278	2.1	278	97	0	1082	32	0	14	53	1.42
10244--10565	80	3.9	79	88	7	491	32	0	13	53	1.40
10362--10404	22	2.0	22	95	0	77	32	0	13	53	1.41
10407--10464	18	3.4	18	72	18	61	31	0	12	56	1.35
9895--10580	166	4.1	163	86	6	750	33	0	13	53	1.42
10528--10570	22	2.0	22	95	0	77	37	0	11	51	1.39
10595--10654	31	1.9	31	93	0	102	43	10	6	40	1.64
13818--14315	191	2.6	195	84	7	620	30	15	14	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15968--16004	17	2.2	17	95	0	65	37	13	29	18	1.90
19363--19401	15	2.6	15	87	0	51	35	7	17	38	1.79
19659--19711	25	2.1	25	96	0	97	50	11	3	33	1.56
20668--20726	20	3.1	19	76	18	68	27	28	20	23	1.99
21336--21457	64	1.9	64	84	3	165	27	18	20	34	1.95
26288--26337	20	2.5	20	96	0	91	28	18	34	20	1.95
27541--27599	30	2.0	29	83	3	73	37	6	22	33	1.80
27830--27900	23	3.1	23	79	0	88	18	22	25	33	1.96
32761--32819	30	2.0	29	83	3	73	37	6	20	35	1.79
33051--33103	23	2.3	23	90	0	79	16	26	26	30	1.97
33050--33118	23	3.0	23	77	8	77	20	24	23	31	1.98
33333--33365	13	2.6	13	85	4	50	69	0	21	9	1.15
33483--33546	2	31.5	2	96	3	119	48	0	1	50	1.10
34070--34116	6	7.8	6	92	0	76	12	48	0	38	1.41
35994--36056	18	3.4	18	72	8	63	30	26	19	23	1.98
36627--36788	64	2.5	64	83	5	177	27	19	20	32	1.97
38231--38270	12	3.3	12	85	0	53	20	32	5	42	1.73
38231--38270	18	2.2	18	90	0	62	20	32	5	42	1.73
39721--41069	201	6.7	201	84	5	1515	32	17	14	36	1.89
39721--41069	401	3.4	397	83	5	1568	32	17	14	36	1.89
41286--41318	12	2.8	12	100	0	66	42	9	18	30	1.81
42974--43012	18	2.2	18	90	0	60	5	38	0	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43195--43261	33	2.0	33	88	0	98	25	41	0	32	1.56
43298--43355	21	2.8	21	94	0	98	15	29	12	43	1.83
43738--43793	24	2.4	23	80	8	69	51	3	0	44	1.18
45733--46884	181	6.3	182	87	2	1516	27	17	14	41	1.87
45733--47298	363	4.4	363	84	6	1938	27	17	13	41	1.87
45733--47298	181	8.7	181	80	7	1470	27	17	13	41	1.87
46715--47220	161	3.0	161	84	8	572	28	16	13	41	1.86
47559--47632	15	4.5	18	74	20	56	32	1	4	62	1.22
47565--47613	25	2.0	25	84	8	64	34	2	0	63	1.06
51586--51619	18	1.9	18	88	5	52	26	32	26	14	1.95
52503--52549	13	3.5	13	76	23	53	29	2	2	65	1.15
52526--52574	23	2.2	23	88	3	73	26	2	0	71	0.97
58263--58313	21	2.3	22	77	16	52	37	7	0	54	1.29
59394--59435	22	1.9	22	95	0	75	50	2	0	47	1.14
59385--59453	22	2.9	24	75	14	63	50	1	1	46	1.19
59570--59613	21	2.0	22	82	4	54	50	0	0	50	1.00

Tables:   1

The End!