genome.fa.s387.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000387.1 Hibiscus syriacus cultivar Beakdansim tig00000711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78417

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67--120	24	2.2	24	96	0	99	38	16	5	38	1.72
60--120	24	2.5	26	89	5	85	40	14	6	37	1.72
4083--4149	20	3.3	20	69	22	68	19	0	19	61	1.35
4079--4249	40	4.4	40	73	16	162	23	1	17	57	1.49
4119--4262	74	1.9	75	91	4	238	25	2	18	54	1.54
12628--12841	75	2.9	75	82	6	242	26	5	14	53	1.61
36695--36725	15	2.1	15	94	5	55	58	0	0	41	0.98
39914--39963	2	25.0	2	100	0	100	50	0	0	50	1.00
41643--41696	20	2.7	20	100	0	108	35	25	20	18	1.95
44035--44070	18	1.9	19	88	5	56	0	33	25	41	1.55
45248--45282	10	3.6	10	88	7	54	45	8	11	34	1.71
52041--52438	197	2.0	197	88	3	586	41	16	17	24	1.89
55133--55242	23	4.9	23	82	10	113	28	26	22	22	1.99
55138--55242	44	2.3	44	85	9	133	29	26	22	20	1.99
55111--55242	67	2.0	67	90	0	210	28	25	21	23	1.99
55301--55332	13	2.3	15	89	10	50	37	15	0	46	1.46
55800--55925	54	2.3	55	81	5	141	26	20	21	30	1.98
55909--55991	20	4.1	20	71	15	64	26	26	14	32	1.95
62081--62161	21	3.8	21	72	18	76	37	27	16	19	1.93
62075--62160	44	2.0	44	92	0	145	34	26	16	22	1.95
62731--62849	54	2.2	54	89	1	175	26	23	18	31	1.97
62833--62886	20	2.7	20	85	5	65	20	31	14	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63994--64018	2	12.5	2	100	0	50	0	0	48	52	1.00
65588--65621	17	1.9	18	88	5	52	35	17	8	38	1.81
66927--66995	34	2.0	34	100	0	138	26	20	2	50	1.62
72764--72995	59	3.9	59	72	10	163	31	21	11	35	1.89
72808--72995	59	3.2	58	74	10	166	33	21	10	34	1.88
72841--73095	117	2.2	117	82	2	296	32	21	10	34	1.88
73491--73537	19	2.6	18	86	10	60	27	25	19	27	1.99

Tables:   1

The End!