Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003872.1 Hibiscus syriacus cultivar Beakdansim tig00008342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61749

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1534--1593
23
2.6
23
100
0
120
31
20
13
35
1.91
1713--1761
23
2.1
23
88
0
71
32
16
12
38
1.86
1393--1761
178
2.1
177
90
4
575
32
13
13
40
1.83
7396--7484
3
29.7
3
90
0
133
67
28
1
3
1.14
7989--8198
65
3.2
65
84
2
260
42
13
17
26
1.86
15689--15716
2
14.0
2
100
0
56
50
0
0
50
1.00
19226--19311
37
2.3
37
80
8
93
44
3
3
48
1.36
22015--22063
24
2.0
24
96
0
89
40
14
4
40
1.64
22942--23099
77
2.1
77
100
0
316
28
8
12
50
1.69
24955--24999
16
2.8
16
80
13
56
77
6
0
15
0.96
24973--25030
20
2.8
21
80
17
68
77
3
5
13
1.07
25285--25315
2
15.0
2
93
6
53
48
3
0
48
1.17
25422--25455
15
2.4
14
90
5
50
73
0
0
26
0.83
28588--28648
6
9.8
6
75
19
54
0
16
3
80
0.84
28592--28647
19
2.8
20
78
10
62
0
17
3
78
0.89
28588--28651
25
2.6
24
79
13
67
0
15
3
81
0.82
29207--29239
2
16.5
2
93
0
57
48
0
0
51
1.00
29223--29266
23
1.9
23
85
0
61
47
0
4
47
1.22
31014--31055
3
14.0
3
94
0
75
64
2
0
33
1.07
31297--31346
25
2.0
25
88
0
73
38
14
18
30
1.89
31315--31451
45
3.0
45
92
2
238
35
18
23
22
1.95
31315--31455
46
3.1
46
90
6
241
35
18
23
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31485--32072
46
12.8
46
93
0
982
32
18
23
25
1.97
31485--32072
137
4.3
138
95
0
993
32
18
23
25
1.97
32748--32805
22
2.6
22
94
0
98
36
15
17
31
1.91
33172--33281
54
2.0
54
82
3
132
30
20
14
34
1.93
34155--34321
74
2.2
75
81
3
194
32
22
15
29
1.95
37198--37248
15
3.3
15
88
2
75
0
25
0
74
0.82
37189--37267
8
9.8
8
84
11
99
1
22
0
75
0.87
42884--42917
2
17.5
2
87
6
52
47
0
2
50
1.16
42900--42944
24
1.9
23
81
4
54
48
0
4
46
1.22
44687--44725
3
13.0
3
100
0
78
66
0
0
33
0.92
51670--51709
18
2.2
18
86
13
55
67
5
5
22
1.30
52734--52780
4
12.0
4
86
13
71
25
0
0
74
0.82
52756--52806
3
17.0
3
76
15
52
33
0
0
66
0.92
52736--52787
12
4.5
11
85
9
68
25
0
0
75
0.81
52734--52790
27
2.1
27
87
12
82
26
0
0
73
0.83
52734--52805
15
5.2
14
79
17
71
30
0
0
69
0.89
52736--52791
23
2.4
23
88
11
80
26
0
0
73
0.84
52743--52802
27
2.2
27
82
11
70
30
0
0
70
0.88
54241--54266
2
13.0
2
100
0
52
50
0
0
50
1.00
55104--55129
3
8.7
3
100
0
52
30
0
0
69
0.89

Tables:   1

The End!