genome.fa.s3873.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003873.1 Hibiscus syriacus cultivar Beakdansim tig00008344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73938

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1867--1923	27	2.0	30	86	10	84	56	0	1	42	1.10
2136--2219	37	2.3	37	79	8	91	48	3	3	44	1.37
2596--2631	19	1.9	19	88	5	56	63	19	0	16	1.30
13213--13422	65	3.2	65	84	2	242	26	17	13	42	1.86
13929--14008	3	26.7	3	92	0	124	3	0	27	68	1.06
13923--14011	21	4.2	21	91	0	133	6	0	24	68	1.13
18876--18913	20	1.9	20	88	0	58	23	10	15	50	1.75
19708--19767	23	2.6	23	83	0	75	41	10	16	31	1.81
19879--19938	23	2.6	23	100	0	120	35	13	20	31	1.91
19708--20083	181	2.1	181	92	1	628	40	12	13	32	1.82
22389--22430	21	2.0	21	90	0	66	52	9	9	28	1.65
22400--22747	175	2.0	177	93	2	594	29	14	13	41	1.84
22577--23130	198	2.8	198	91	4	860	31	14	13	41	1.84
24506--24563	24	2.4	25	77	11	66	50	15	5	29	1.66
27064--27111	15	2.9	16	80	17	62	27	2	43	27	1.66
27406--27443	20	1.9	20	94	0	67	52	7	10	28	1.64
27400--27443	20	2.2	20	87	4	61	52	9	9	29	1.64
27407--28152	198	3.8	198	85	3	965	32	15	12	38	1.85
27407--28152	393	1.9	391	84	4	1009	32	15	12	38	1.85
30456--30701	123	2.0	123	91	0	402	27	19	25	27	1.99
35950--35997	18	2.7	18	100	0	96	25	18	0	56	1.42
36017--36049	14	2.2	16	89	10	52	15	33	0	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38500--39151	183	3.6	183	87	2	855	28	15	12	42	1.83
39719--39749	13	2.4	13	94	0	53	16	3	25	54	1.56
49467--49758	147	2.0	147	90	1	460	26	15	7	50	1.71
50198--50239	6	7.2	6	82	15	52	83	0	0	16	0.65
50198--50239	11	3.6	11	84	15	50	83	0	0	16	0.65
52522--52808	84	3.4	82	83	2	340	24	18	23	33	1.97
52859--53228	123	3.0	124	88	2	548	26	17	24	31	1.97
53143--53589	240	1.8	242	89	3	709	26	18	23	32	1.97
54835--55097	95	2.7	95	86	3	321	33	16	16	33	1.92
56015--56054	19	2.1	19	100	0	80	45	15	10	30	1.78
60283--60418	60	2.3	60	81	2	157	31	25	4	38	1.75
67336--67399	3	21.3	3	81	12	78	68	0	1	29	0.99
67459--67602	37	3.9	37	78	14	138	45	8	3	43	1.51
67459--67589	34	3.6	34	79	17	133	45	8	3	43	1.49
67569--67627	25	2.4	25	86	11	77	47	6	3	42	1.46
67529--67654	63	2.0	62	86	10	177	44	7	3	44	1.50
67703--67749	2	23.5	2	100	0	94	0	0	48	51	1.00
68331--68916	84	7.0	84	81	3	682	23	19	25	30	1.98
68331--68916	168	3.5	167	83	3	759	23	19	25	30	1.98
68291--68916	332	1.9	335	87	3	920	23	20	25	30	1.98
73645--73670	6	4.3	6	100	0	52	50	0	0	50	1.00

Tables:   1

The End!