genome.fa.s3874.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003874.1 Hibiscus syriacus cultivar Beakdansim tig00008348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42751

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958--2212	19	14.7	19	75	20	247	44	18	22	15	1.86
1958--2173	51	4.1	52	88	8	266	45	17	22	14	1.85
1989--2212	70	3.2	68	79	13	267	44	17	23	15	1.86
2041--2212	89	1.9	88	92	3	292	43	18	22	15	1.87
2202--2317	52	2.2	52	96	3	216	13	24	18	43	1.86
2221--2317	19	5.4	19	82	15	134	14	22	17	45	1.85
4362--4514	18	8.8	18	75	14	133	45	23	20	10	1.82
4361--4445	37	2.3	36	85	2	107	45	25	20	8	1.78
4418--4509	33	2.8	33	91	1	150	45	21	20	11	1.83
4510--4600	19	5.4	18	71	26	74	7	16	27	48	1.73
4510--4632	33	3.7	33	87	2	167	8	17	26	47	1.77
4679--4868	93	2.1	93	97	1	364	45	18	12	22	1.83
6542--6638	20	5.2	20	72	18	100	46	17	24	11	1.81
6540--6604	21	3.1	21	82	4	96	47	15	26	10	1.78
6589--6645	14	3.7	14	75	20	60	43	22	24	8	1.81
6540--6662	33	3.5	33	90	8	165	46	18	24	10	1.81
6679--6735	14	3.7	14	75	20	60	8	24	22	43	1.81
6663--6742	33	2.4	33	95	0	142	8	21	22	47	1.78
6723--6796	21	3.5	21	80	7	96	14	20	17	47	1.83
6876--6946	33	2.2	33	94	0	124	47	16	23	11	1.79
7326--7499	20	8.6	20	86	5	224	18	20	27	33	1.96
8078--8117	21	1.9	21	84	0	53	37	2	17	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15047--15081	16	2.2	16	94	0	61	51	11	5	31	1.61
15761--15786	5	5.2	5	100	0	52	61	19	0	19	1.35
23323--23629	102	3.0	101	85	2	416	38	10	9	41	1.72
24550--24631	37	2.3	36	85	6	105	32	4	18	43	1.71
24562--24631	37	1.9	37	88	2	106	32	4	17	45	1.67
29115--29186	37	2.0	36	91	5	119	27	5	20	45	1.73
29540--29578	20	2.0	20	89	0	60	33	5	25	35	1.78
31965--32005	14	3.1	14	82	10	59	12	26	0	60	1.31
32727--32780	20	2.7	19	85	5	63	29	27	16	25	1.97
33819--33908	32	2.8	32	79	0	108	32	15	18	33	1.93
38136--38180	20	2.2	20	80	0	54	20	20	31	28	1.97
38184--38254	20	3.6	19	76	16	72	30	26	19	22	1.98
38187--38273	20	4.4	19	76	16	61	33	24	19	22	1.97
42092--42525	214	2.0	215	99	0	852	29	14	17	38	1.89

Tables:   1

The End!