genome.fa.s3876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003876.1 Hibiscus syriacus cultivar Beakdansim tig00008351_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70408

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1903--2087	49	3.6	49	80	16	210	41	2	12	43	1.54
1844--2087	108	2.3	109	90	2	384	41	2	12	44	1.53
1954--2067	60	1.9	59	92	1	192	41	1	14	42	1.55
1843--2076	59	4.1	58	81	12	290	41	1	12	44	1.50
1882--2116	49	4.5	50	69	20	126	40	2	13	43	1.55
2276--2364	14	6.9	14	70	22	61	43	2	7	46	1.45
2315--2395	24	3.5	23	77	14	78	40	0	8	50	1.33
2317--2395	21	3.4	22	81	15	72	40	0	8	50	1.34
2275--2384	39	2.9	38	82	7	102	42	1	8	47	1.44
2669--2835	11	14.1	11	71	10	100	43	1	10	45	1.45
2669--2834	23	7.0	23	72	9	93	42	1	10	45	1.45
2717--2805	26	3.6	26	82	11	98	46	1	8	43	1.42
2789--2855	24	2.9	23	82	10	75	40	0	7	52	1.30
5363--5486	44	3.1	39	73	18	110	45	12	0	41	1.47
5635--5681	14	3.5	13	77	11	51	2	40	0	57	1.11
6064--6107	11	4.2	11	94	5	74	29	27	9	34	1.87
15958--16065	51	2.1	51	82	3	128	38	12	21	27	1.89
17891--17937	19	2.4	19	82	3	58	23	0	21	55	1.44
20964--21027	32	2.0	32	90	6	103	50	17	6	26	1.69
21200--21305	37	3.0	37	62	20	91	48	12	13	26	1.77
21108--21305	68	3.0	68	79	8	264	47	11	12	28	1.75
21743--21803	15	4.2	14	83	6	70	31	1	1	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21752--21804	3	18.0	3	84	3	72	33	0	1	64	1.05
23290--23319	3	10.0	3	92	0	51	33	3	0	63	1.11
23625--23661	16	2.2	17	90	4	58	43	0	0	56	0.99
23611--23661	26	2.0	26	84	7	68	43	0	0	56	0.99
24132--24190	28	2.2	26	78	6	64	32	3	1	62	1.21
24140--24201	30	2.1	30	82	11	76	32	3	1	62	1.20
24171--24207	18	2.1	18	89	0	56	27	0	2	70	1.01
28504--28555	18	2.8	18	91	2	77	86	3	9	0	0.69
28515--28556	9	4.3	10	82	11	52	88	0	11	0	0.53
28504--28556	11	4.6	11	81	9	52	86	3	9	0	0.68
30669--30891	114	2.0	114	91	0	365	33	14	21	30	1.93
33196--33277	22	3.7	22	73	0	74	36	10	13	39	1.80
33953--34791	76	11.0	76	99	0	1651	22	21	22	33	1.97
34938--35001	14	4.2	14	81	16	67	31	1	1	65	1.11
34947--35002	3	19.0	3	85	3	78	33	0	1	64	1.04
36511--36540	3	10.0	3	92	0	51	33	3	0	63	1.11
36836--36873	17	2.2	17	90	0	58	42	0	0	57	0.98
37810--37912	21	4.9	20	70	12	55	33	24	18	23	1.96
37880--38052	20	8.6	20	84	5	206	35	27	19	18	1.95
38432--38502	33	2.2	33	94	0	124	11	23	16	47	1.79
38582--38688	21	5.6	20	73	17	102	46	18	21	13	1.83
38643--38699	14	3.7	14	75	20	60	43	22	24	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38636--38715	33	2.4	33	95	0	142	47	22	21	8	1.78
38733--38770	14	2.7	14	100	0	76	7	26	23	42	1.81
38755--38819	21	3.1	21	77	4	87	10	24	15	49	1.76
38754--38817	20	3.2	20	77	4	83	12	23	15	48	1.79
40503--40725	93	2.4	93	99	0	437	22	13	18	44	1.85
40841--40897	14	3.7	14	72	20	51	43	24	22	8	1.81
40855--40946	19	5.4	18	72	24	65	46	28	17	7	1.75
40823--40946	33	3.7	33	91	1	185	45	27	17	8	1.78
40872--40930	14	3.9	14	76	20	64	47	28	16	6	1.72
40942--41114	19	9.6	19	77	12	141	9	19	24	45	1.81
40964--41020	14	3.7	14	75	20	51	10	22	22	43	1.84
40942--41114	33	4.8	38	81	8	150	9	19	24	45	1.81
43032--43067	14	2.6	14	95	0	63	33	0	22	44	1.53
43158--43245	19	4.8	19	82	14	123	47	15	22	13	1.81
43158--43264	53	2.0	53	98	1	207	45	16	24	13	1.83
43254--43514	19	14.7	19	78	17	294	14	22	17	45	1.84
43278--43547	33	7.8	34	74	17	234	13	21	18	45	1.84
43260--43528	53	5.1	52	88	9	397	13	22	17	46	1.84
43363--43514	72	2.1	72	96	0	277	14	20	17	47	1.82
45812--45836	12	2.1	12	100	0	50	0	28	0	72	0.86
46011--46057	24	2.0	24	87	8	69	38	21	14	25	1.92
46750--46978	20	11.4	20	85	1	235	19	17	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46946--47043	21	4.8	20	75	10	81	21	19	21	37	1.94
46946--47044	42	2.4	43	77	11	100	21	19	22	37	1.94
47255--47328	32	2.3	32	80	0	85	36	17	12	33	1.87
47461--47485	8	3.1	8	100	0	50	76	0	0	24	0.80
47777--47824	23	2.1	23	88	0	69	41	6	18	33	1.76
47741--47989	87	2.9	87	93	0	426	42	9	14	33	1.78
47864--47911	23	2.1	23	88	0	69	39	6	18	35	1.76
48269--48297	15	1.9	15	100	0	58	17	6	27	48	1.72
48848--49341	126	3.9	125	83	3	548	42	12	10	34	1.77
48849--49341	252	2.0	249	84	2	648	42	12	10	34	1.77
54071--54095	13	1.9	13	100	0	50	48	0	0	52	1.00
54628--54706	36	2.2	36	100	0	158	41	12	24	21	1.87
56959--57008	21	2.4	21	93	0	82	26	6	14	54	1.63
60307--60397	37	2.4	37	92	5	148	35	30	8	25	1.86
61755--61793	19	2.1	19	100	0	78	28	20	20	30	1.98
64638--64710	3	24.7	3	97	2	139	65	0	0	34	0.93
64855--65605	231	3.3	229	89	4	1102	29	20	14	36	1.91
64855--65588	114	6.4	113	92	3	1001	29	20	14	35	1.92
66292--66512	115	1.9	114	93	0	379	29	21	15	33	1.94
67618--67703	7	12.1	7	77	14	72	3	12	0	83	0.76
67618--67690	16	4.8	15	74	14	60	4	12	0	83	0.78
67618--67703	24	3.7	23	78	13	95	3	12	0	83	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67618--67701	37	2.4	35	82	13	109	3	13	0	83	0.77
67618--67703	15	5.5	15	80	15	77	3	12	0	83	0.76

Tables:   1

The End!