genome.fa.s3878.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003878.1 Hibiscus syriacus cultivar Beakdansim tig00008355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157489

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4153--4265	11	9.9	11	68	13	59	53	4	0	41	1.21
4110--4262	69	2.1	69	94	5	261	51	3	0	44	1.20
4408--4675	49	5.4	49	92	1	412	35	12	22	28	1.91
10976--11005	13	2.3	13	94	0	51	66	0	16	16	1.25
22334--22365	15	2.1	15	100	0	64	34	40	6	18	1.76
22886--22967	41	2.0	41	97	0	155	51	7	8	32	1.60
24112--24161	22	2.2	23	79	10	59	42	0	20	38	1.52
24364--24428	30	2.2	30	91	0	103	23	12	15	49	1.78
24648--24726	32	2.4	32	97	2	149	27	21	25	25	1.99
24744--24796	10	5.3	10	80	17	65	62	11	18	7	1.52
24744--24796	20	2.7	20	96	0	97	62	11	18	7	1.52
26263--26313	2	25.5	2	100	0	102	50	0	0	49	1.00
26372--26449	35	2.3	35	81	2	113	33	29	25	11	1.91
26527--26617	24	3.8	24	85	2	121	37	19	17	25	1.94
26527--26617	47	1.9	48	88	2	139	37	19	17	25	1.94
27997--28042	15	3.3	15	76	14	53	56	0	2	41	1.11
29513--29615	3	34.7	3	92	1	154	67	0	1	30	1.01
29941--30617	113	6.0	113	91	1	975	28	17	14	38	1.90
31334--31891	83	6.7	83	93	1	910	36	22	13	27	1.92
33030--33077	6	7.8	6	86	13	71	0	14	0	85	0.60
33029--33080	25	2.2	23	93	6	86	0	13	0	86	0.57
43077--43114	17	2.3	17	86	4	51	57	2	2	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43639--43677	15	2.9	13	88	11	53	66	2	7	23	1.30
44377--44422	15	3.3	15	76	14	53	56	0	2	41	1.11
45889--45988	3	33.7	3	93	2	166	64	0	3	33	1.09
47622--47663	18	2.3	18	91	0	66	14	19	47	19	1.82
52090--52137	25	1.9	25	86	0	69	14	25	18	41	1.88
54260--54298	17	2.3	17	100	0	78	12	23	46	17	1.83
54294--54343	9	5.3	9	81	9	55	24	30	30	16	1.96
54296--54344	10	5.1	10	78	11	50	24	30	26	18	1.98
54296--54335	19	2.1	19	100	0	80	25	32	25	17	1.97
61573--61644	19	3.7	19	78	12	74	30	27	26	15	1.96
61573--61644	29	2.4	30	90	6	112	30	27	26	15	1.96
61573--61644	9	7.4	9	79	11	63	30	27	26	15	1.96
62983--63014	6	5.3	6	100	0	64	50	15	0	34	1.45
65967--66037	19	3.6	19	83	9	90	45	11	19	23	1.83
66926--66992	23	2.9	23	95	0	116	28	26	28	16	1.97
68047--68071	13	1.9	13	100	0	50	44	8	0	48	1.32
69655--69694	18	2.4	18	84	12	50	37	0	0	62	0.95
71342--71390	22	2.2	22	82	7	64	30	30	30	8	1.86
72087--72406	103	3.1	103	92	0	514	26	12	23	37	1.91
72416--72535	47	2.6	47	93	1	197	25	23	21	30	1.99
72416--72539	23	5.3	23	77	2	122	25	22	20	30	1.98
77279--77327	22	2.2	22	82	7	64	32	30	28	8	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78021--78341	103	3.1	103	96	0	588	26	13	23	36	1.92
78348--78467	47	2.6	47	94	1	206	23	22	23	30	1.99
78348--78472	23	5.3	23	76	2	124	24	21	23	31	1.98
79601--79741	64	2.2	63	86	5	185	35	18	19	26	1.95
81140--81200	21	2.9	21	82	4	77	27	22	24	24	2.00
81142--81203	22	2.9	22	85	2	81	27	22	24	25	2.00
84360--84498	63	2.2	63	83	6	165	36	18	19	25	1.94
84396--84519	64	1.9	65	87	8	182	35	16	20	27	1.94
85895--85956	22	2.9	22	87	2	90	27	24	24	24	2.00
89113--89253	64	2.2	63	86	5	185	35	18	19	26	1.95
90646--90707	22	2.9	22	87	2	90	27	24	24	24	2.00
94534--94569	3	12.0	3	100	0	72	33	0	0	66	0.92
106183--106562	189	2.0	189	98	0	742	36	6	27	29	1.81
112489--112528	18	2.2	19	86	4	55	67	2	10	20	1.31
115652--115750	30	3.1	31	71	20	96	42	21	17	19	1.89
115632--115771	66	2.1	66	94	0	244	42	20	17	20	1.90
115666--115771	35	3.1	35	69	20	107	43	19	16	20	1.88
115632--115787	66	2.4	66	91	0	222	42	19	18	19	1.90
121159--121213	23	2.5	22	76	8	58	41	1	0	56	1.10
125818--125855	20	1.9	20	94	0	67	31	34	15	18	1.92
125866--126027	65	2.5	65	90	1	245	31	24	16	28	1.96
125866--126045	64	2.8	64	85	7	229	31	23	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132431--132643	103	2.1	103	94	1	374	27	14	22	36	1.92
132660--132727	23	3.0	23	77	0	73	22	25	25	27	1.99
134123--134167	21	2.1	21	87	0	63	33	31	22	13	1.92
135412--135732	103	3.1	103	98	0	624	27	13	22	36	1.92
135744--135816	23	3.3	23	76	3	78	21	20	24	32	1.97
141033--141063	12	2.6	12	100	0	62	54	22	6	16	1.64
141076--141113	20	1.9	20	88	0	58	31	36	13	18	1.89
141141--141266	64	2.0	65	90	1	200	31	23	15	29	1.95
145065--145257	69	2.9	66	78	3	201	29	11	21	36	1.89
157002--157040	20	2.0	20	84	0	51	30	10	0	58	1.31

Tables:   1

The End!