genome.fa.s3879.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003879.1 Hibiscus syriacus cultivar Beakdansim tig00008356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79968

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4930--5603	99	6.7	99	87	4	915	33	25	17	22	1.96
4930--5684	99	7.5	102	86	4	855	33	25	18	23	1.97
6152--6231	21	4.0	21	72	20	82	28	20	11	40	1.86
6170--6250	36	2.2	36	97	0	153	28	22	12	37	1.90
6200--6345	67	2.2	64	85	3	184	28	20	11	39	1.88
6346--6532	84	2.2	84	87	1	259	29	27	21	21	1.98
17151--17239	42	2.2	42	82	8	103	38	20	20	21	1.94
17191--17564	81	4.6	81	75	5	290	32	17	18	31	1.94
17246--17517	83	3.3	81	76	4	242	32	16	17	33	1.92
18822--18861	17	2.4	17	100	0	80	17	45	22	15	1.85
18869--18949	29	2.8	30	88	5	121	27	4	22	45	1.72
18961--19027	29	2.3	29	84	7	82	31	5	20	41	1.77
25791--25846	24	2.3	24	100	0	112	28	17	16	37	1.91
26078--26123	10	4.6	10	79	15	51	4	23	28	43	1.73
26078--26123	20	2.3	20	96	0	83	4	23	28	43	1.73
26102--26184	30	2.8	30	88	0	130	8	32	20	38	1.83
26078--26183	20	5.3	20	69	17	67	7	30	23	38	1.82
26168--26205	20	1.9	20	84	10	51	5	26	23	44	1.74
26915--26960	21	2.1	22	92	4	76	19	45	21	13	1.84
26968--27049	29	2.8	30	90	1	130	24	6	24	45	1.76
27032--27160	29	4.4	29	89	3	190	31	6	19	43	1.75
27879--27956	24	3.3	24	78	1	86	24	15	17	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28449--28487	19	2.1	19	86	13	55	30	5	5	58	1.41
30531--30669	43	3.3	42	78	5	118	41	16	21	20	1.91
31667--31716	14	3.4	14	75	20	57	60	14	2	24	1.45
31660--31721	30	2.1	30	100	0	124	61	12	3	22	1.46
31671--31720	16	3.2	16	70	30	54	62	12	2	24	1.40
34487--34563	35	2.2	36	90	2	120	40	23	1	35	1.63
34961--35208	130	1.9	130	92	0	415	36	15	12	35	1.85
35135--35181	23	2.1	21	84	7	58	36	14	14	34	1.88
34975--35239	130	2.0	129	81	4	300	40	13	12	33	1.83
35675--35706	15	2.0	17	88	11	50	62	6	3	28	1.34
39328--39395	23	3.0	23	86	0	100	17	26	26	29	1.98
42071--42113	17	2.6	16	78	7	50	34	0	25	39	1.56
44467--44534	23	3.0	23	86	0	100	17	26	26	29	1.98
46213--46245	17	1.9	17	88	11	50	78	0	9	12	0.95
46223--46291	4	17.0	4	76	8	50	73	1	4	20	1.07
46340--46659	37	8.7	36	81	14	340	44	8	2	44	1.49
46346--46655	77	4.3	74	78	17	301	44	8	2	43	1.50
46414--46551	65	2.1	64	88	6	199	44	9	1	44	1.45
46454--46512	25	2.4	25	97	0	109	42	10	0	47	1.37
46479--46661	39	4.8	40	89	6	281	44	7	2	44	1.46
46482--46703	116	1.9	117	86	8	319	45	6	2	45	1.42
46526--46697	77	2.3	74	80	14	208	46	5	2	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46642--46701	2	30.5	2	96	3	113	48	0	0	51	1.00
57388--57427	16	2.6	15	88	7	62	57	0	5	37	1.21
57389--57427	15	2.5	15	95	4	69	58	0	5	35	1.20
58571--58648	20	4.4	18	74	19	67	76	1	2	19	0.96
58699--59025	38	8.4	38	83	8	363	44	5	3	46	1.43
58706--59025	78	4.1	77	83	9	380	44	5	3	47	1.42
61642--61782	73	1.9	73	97	0	264	34	17	14	33	1.90
71219--71260	10	4.2	10	79	11	50	38	26	4	30	1.77
73099--73257	15	10.6	15	68	5	97	27	32	3	37	1.75
73091--73407	30	10.6	30	82	5	338	25	34	4	35	1.77
73091--73418	120	2.7	120	88	0	469	25	34	4	35	1.77
75099--75143	20	2.2	20	96	0	81	33	13	24	28	1.93
75309--75349	22	1.9	21	85	5	55	21	24	21	31	1.98

Tables:   1

The End!