genome.fa.s388.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000388.1 Hibiscus syriacus cultivar Beakdansim tig00000714_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69169

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56--104	15	3.1	15	79	5	53	24	10	2	63	1.37
209--251	19	2.3	19	96	4	79	37	6	0	55	1.27
3533--3562	15	2.0	15	100	0	60	33	6	0	60	1.23
11199--11243	20	2.2	20	88	0	63	26	20	22	31	1.98
11226--11319	42	2.3	41	83	1	116	25	22	23	28	1.99
11480--11584	42	2.5	41	85	1	138	24	21	20	32	1.98
11495--11572	21	3.7	21	67	13	61	26	19	21	32	1.97
11475--11588	20	5.6	20	69	10	70	24	21	21	32	1.98
22016--22051	18	2.0	18	88	0	54	52	0	16	30	1.44
33033--33071	20	1.9	21	89	5	62	66	2	10	20	1.33
33103--33180	2	39.5	2	80	12	90	47	1	1	50	1.17
33152--33188	18	2.0	19	89	5	58	43	5	0	51	1.24
33105--33189	24	3.9	23	74	15	65	48	2	1	48	1.22
33103--33274	13	13.2	13	73	15	81	47	4	4	44	1.41
33441--33482	17	2.4	17	81	18	50	42	0	28	28	1.56
33709--33783	10	7.5	10	79	11	64	2	18	46	32	1.63
33741--33809	4	18.2	4	75	21	69	1	23	49	26	1.59
33741--33809	14	5.1	14	84	7	88	1	23	49	26	1.59
33733--33809	10	7.7	10	77	11	77	2	23	48	25	1.64
33901--33939	2	20.0	2	94	5	71	48	0	0	51	1.00
34021--34053	7	5.0	7	85	14	52	30	42	0	27	1.56
34141--34171	12	2.6	12	89	0	53	32	0	19	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34092--34236	78	1.9	75	92	5	247	43	2	8	46	1.45
34261--34316	2	28.0	2	100	0	112	50	0	0	50	1.00
34437--34492	11	5.5	11	68	20	50	50	7	1	41	1.40
34575--34618	21	2.1	21	86	0	61	47	29	0	22	1.51
34468--36470	524	3.7	526	86	4	2631	43	11	8	36	1.72
35092--35142	14	3.6	14	71	10	50	47	29	1	21	1.62
35485--35550	20	3.2	20	80	8	71	48	6	6	39	1.53
34432--36470	549	3.8	543	87	5	2848	43	11	8	36	1.72
36060--36100	21	1.9	22	95	5	75	51	4	2	41	1.36
36203--36247	7	6.4	7	80	10	56	55	26	0	17	1.42
36176--36243	21	3.2	21	69	8	57	48	29	0	22	1.51
37211--37317	24	4.5	24	71	0	79	46	15	14	22	1.83
37214--37319	48	2.2	48	79	0	113	47	15	16	21	1.82
38454--38489	18	2.0	18	88	0	54	22	22	5	50	1.70
39793--39824	7	4.4	7	92	7	55	25	28	34	12	1.92
39794--39840	8	6.5	8	79	20	59	21	25	38	14	1.92
39794--39840	15	3.3	15	91	5	71	21	25	38	14	1.92
39801--39845	13	3.3	13	90	6	63	17	24	42	15	1.88
39822--39929	18	6.6	18	75	20	119	12	17	50	19	1.78
39816--39924	31	3.5	31	97	0	200	14	17	48	19	1.81
39841--39907	13	4.8	13	74	16	62	14	16	49	19	1.80
42056--42162	24	4.5	24	72	0	88	46	16	14	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42056--42164	48	2.3	48	75	0	110	46	16	15	21	1.83
43299--43334	18	2.0	18	88	0	54	22	22	5	50	1.70
44639--44685	15	3.3	15	85	5	62	21	27	38	12	1.90
44664--44721	13	4.1	13	80	20	71	13	24	46	15	1.82
44667--44743	18	4.6	18	84	15	119	10	22	50	16	1.75
44664--44739	31	2.5	31	100	0	152	13	23	47	15	1.81
44685--44721	13	2.8	13	100	0	74	10	24	48	16	1.77
46871--46977	24	4.5	24	72	0	88	46	16	14	21	1.83
46871--46979	48	2.3	48	75	0	110	46	16	15	21	1.83
48114--48149	18	2.0	18	88	0	54	22	22	5	50	1.70
49455--49484	7	4.1	7	91	8	51	26	26	33	13	1.93
49455--49500	8	6.4	8	79	20	57	21	26	36	15	1.93
49455--49500	15	3.2	15	90	6	69	21	26	36	15	1.93
49461--49558	13	7.3	13	79	17	103	15	22	45	16	1.84
49482--49562	18	4.6	18	78	20	98	11	20	50	17	1.76
49476--49545	36	2.0	35	94	2	122	12	21	48	17	1.80
49500--49557	30	1.9	31	96	3	109	12	20	50	17	1.78
50422--50448	13	2.1	13	100	0	54	44	0	0	55	0.99
51444--51485	2	20.0	2	85	9	57	50	2	2	45	1.27
51444--51502	29	2.0	29	86	6	82	52	3	3	40	1.35
51575--51660	7	12.3	7	78	0	64	50	29	0	20	1.49
51568--51657	21	4.3	21	74	5	83	53	25	0	21	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51576--51650	28	2.7	28	93	0	123	52	26	0	21	1.47
52144--52181	7	5.4	7	81	12	51	57	26	0	15	1.38
52410--52465	21	2.7	21	100	0	112	39	0	0	60	0.97
52661--52698	15	2.4	16	86	4	51	36	15	26	21	1.93
56739--56779	21	2.1	19	90	9	64	70	14	0	14	1.16
60624--60743	63	1.9	64	87	1	179	43	16	12	27	1.84
63499--63570	21	3.5	21	84	1	83	33	23	20	22	1.97
63515--63594	21	3.8	21	79	0	88	36	22	20	21	1.95
63515--63615	42	2.4	42	81	3	123	33	22	18	24	1.97
66301--66409	48	2.3	48	85	9	143	48	10	4	36	1.57

Tables:   1

The End!