genome.fa.s3880.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003880.1 Hibiscus syriacus cultivar Beakdansim tig00008359_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61447

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--627	85	7.4	85	79	4	669	27	18	18	35	1.94
2--587	168	3.5	168	86	2	743	28	17	18	35	1.93
2064--2262	97	2.0	98	90	2	312	31	17	16	34	1.92
3575--5246	834	2.0	834	99	0	3283	26	17	19	36	1.94
8173--8214	18	2.3	19	80	12	52	71	2	0	26	0.98
8187--8257	18	3.8	18	79	17	81	66	0	1	32	1.01
8285--8400	35	3.3	35	79	8	112	47	12	1	38	1.51
8303--8401	33	2.9	33	82	5	101	46	12	1	40	1.48
8400--8518	2	62.0	2	91	8	203	48	0	0	51	1.00
8500--8618	36	3.3	36	82	8	143	42	6	3	47	1.46
8597--8642	23	2.0	24	91	8	78	41	8	4	45	1.55
8502--8757	36	7.3	35	71	18	131	42	7	2	47	1.44
8636--8767	38	3.4	38	72	17	103	43	6	1	48	1.39
8572--8694	66	1.9	64	86	6	176	43	8	2	45	1.46
8494--8745	136	1.8	138	81	11	320	43	7	2	47	1.43
8778--8830	9	6.2	9	85	12	51	83	0	1	15	0.74
8957--9052	50	1.9	50	86	0	138	22	30	28	18	1.98
18086--18198	56	2.0	56	91	0	181	46	25	7	19	1.77
19989--20176	60	3.2	60	87	3	247	32	6	15	45	1.71
20797--20827	15	2.1	15	93	0	53	35	22	0	41	1.54
21527--21641	60	1.9	60	96	0	212	39	6	11	42	1.68
23406--23435	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25658--25765	55	2.0	55	88	0	162	27	15	10	46	1.78
25658--25765	27	4.0	27	83	7	137	27	15	10	46	1.78
26631--26665	17	2.1	17	100	0	70	37	17	28	17	1.92
26926--26993	31	2.3	30	82	14	79	60	7	1	30	1.33
26926--26993	30	2.3	31	82	14	81	60	7	1	30	1.33
27746--27813	35	1.9	35	91	5	111	35	14	19	30	1.92
30534--30636	27	3.8	27	85	5	102	32	11	9	46	1.73
30534--30636	54	1.9	54	80	7	120	32	11	9	46	1.73
31157--31193	19	1.9	19	100	0	74	27	21	29	21	1.99
31159--31201	19	2.3	19	91	0	68	27	18	30	23	1.98
37524--37569	20	2.3	20	96	0	83	65	0	19	15	1.28
59802--59838	15	2.3	17	90	9	60	37	10	0	51	1.37
59942--60013	22	3.2	22	76	18	60	79	1	8	11	1.00
59959--60041	18	4.6	18	75	19	68	81	4	4	8	0.96

Tables:   1

The End!