genome.fa.s3882.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003882.1 Hibiscus syriacus cultivar Beakdansim tig00008373_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49581

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2086--2118	14	2.3	15	89	5	50	33	24	24	18	1.97
6993--7065	20	3.7	20	72	17	71	35	27	16	20	1.94
7058--7185	39	3.2	39	83	3	103	26	24	13	35	1.92
7079--7205	40	3.2	39	83	6	148	26	23	13	36	1.92
7078--7185	20	5.4	20	73	6	76	25	24	12	37	1.91
7620--7669	17	2.9	17	91	8	84	0	30	4	66	1.10
7813--7867	20	2.6	20	82	8	65	38	10	23	27	1.88
7855--7931	40	1.9	40	81	5	93	28	15	22	33	1.94
9960--10003	22	2.0	21	86	4	61	56	0	0	43	0.99
13446--13479	2	17.5	2	87	6	52	55	0	0	44	0.99
13498--13532	2	18.0	2	94	5	63	51	0	0	48	1.00
13446--13536	8	13.3	7	78	15	52	54	1	3	40	1.24
13610--13693	41	2.0	41	95	0	150	41	16	4	36	1.70
14001--14063	20	3.2	20	83	0	72	39	14	17	28	1.89
14001--14076	40	1.9	39	83	2	98	40	11	17	30	1.85
15752--15784	16	2.1	16	100	0	66	45	18	0	36	1.49
18036--18117	21	3.8	22	76	7	69	17	24	35	23	1.95
34607--34708	39	2.6	39	98	0	195	18	15	9	55	1.67
37372--37433	23	2.7	23	100	0	124	20	25	24	29	1.99
44030--44054	2	12.5	2	100	0	50	52	0	48	0	1.00
46008--46470	84	5.5	84	87	0	631	24	19	21	33	1.97
46480--46837	124	2.9	124	90	0	563	26	18	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46840--47070	64	3.6	64	87	0	318	29	14	20	35	1.93
46840--47070	128	1.8	128	90	0	372	29	14	20	35	1.93

Tables:   1

The End!